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Job DescriptionP42682
Confidence100.00%DateTue Jul 30 13:16:14 BST 2013
Rank75Aligned Residues236
% Identity26%Templatec2bmcD_
PDB info PDB header:transferaseChain: D: PDB Molecule:serine threonine-protein kinase 6; PDBTitle: aurora-2 t287d t288d complexed with pha-680632
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   263......270.........280.........290. ........300.. .......310.......
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Query Sequence  KWEIDPSELAFVKEIGSGQFGVVHLGEWR. AHIPVAIKAIN. . . . EGSMSEEDFIEEAKV
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Template Sequence  QWAL. . EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI
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G..GG
SSTTT

TT
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   127..130 .........140.........150.........160.........170.........180....
 
   318.320.........330.........340.........350.........360.........370.......
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Query Sequence  MMKLSHSRLVQLYGVCIQQKPLYIVTEFMENGCLLDYLRERKGQLQKALLLSMCQDICEG
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Template Sequence  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL. SKFDEQRTATYITELANA
Template Known Secondary structure  TT


TTB


SS


TT
B.SS

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   185....190.........200.........210.........220..... ....230.........240...
 
   378.380.........390.........400.........410.........420.........430.......
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Query Sequence  MAYLERSCYIHRDLAARNCLVSSACVVKISDFGMARYVLDDEYISSSGAKFPVKWCPPEV
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Template Sequence  LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS. . . . . . . . . . . . . . . VTLDYLPPEM
Template Known Secondary structure  TTT




GGG
TTS

S

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GGG

GGG
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   244.....250.........260.........270........ .280........
 
   438.440.........450.........460.........470.........480.........490.......
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Query Sequence  FHFNKYSSKSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAISQGFRLYRPHLAPMTIYR
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Template Sequence  IEGRMHDEKVDLWSLGVLCYEFLV. GKPPFEANTYQETYKRISRV. EFTFPDFVTEGARD
Template Known Secondary structure  TTTTSSGGG.SS
TT

SSTT.




TTS
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   301........310.........320.... .....330.........340.... .....350........
 
   498.500.........510........
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Query Sequence  VMYSCWHESPKGRPTFAELLQ
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Template Sequence  LISRLLKHNPSQRPMLREVLE
Template Known Secondary structure  S
SSGGGS

T
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   359360.........370.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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