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Job DescriptionP42682
Confidence100.00%DateTue Jul 30 13:16:14 BST 2013
Rank144Aligned Residues248
% Identity23%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290.. .......300.. .......310.........320
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Query Sequence  IDPSELAFVKEIGSGQFGVVHLGEWRA. HIPVAIKAIN. . . . EGSMSEEDFIEEAKVMMK
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ
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   240.........250.........260.........270.........280.........290.........
 
   321........330.........340.........350.........360.........370.........
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Query Sequence  . LSHSRLVQLYGVCIQQKPLYIVTEFMENGCLLDYLRERKGQLQKALLLSMCQDICEGMA
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Template Sequence  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ. RKLPEEHARFYSAEISLALN
Template Known Secondary structure  TTSSTTB


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   300.........310.........320.........330........ .340.........350........
 
   380.........390.........400.........410.........420.........430.........
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Query Sequence  YLERSCYIHRDLAARNCLVSSACVVKISDFGMARYVLDDEYISSSGAKFPVKWCPPEVFH
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Template Sequence  YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSFCG. . TPNYIAPEILR
Template Known Secondary structure  TT
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GGG
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TT
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TT

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GGG

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   359360.........370.........380.........390.........400..... ....410......
 
   440.........450.........460.........470.........480.........490.........
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Query Sequence  FNKYSSKSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAISQGFRLYRPHLAPMTIYRVM
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Template Sequence  GEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILEK. QIRIPRSMSVKAASVL
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   418.420.........430......... 440.........450......... 460.........470.....
 
   500.........510.. ......
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Query Sequence  YSCWHESPKGRPT. . . . . . FAELLQ
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Template Sequence  KSFLNKDPKERLGCLPQTGFADIQG
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   485....490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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