Job Description A1A535 Confidence 77.66% Date Wed Jul 10 14:03:03 BST 2013 Rank 138 Aligned Residues 206 % Identity 11% Template c4adyA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn2; PDBTitle: crystal structure of 26s proteasome subunit rpn2 Resolution 2.70 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	.	T	E	S	I	E	K	H	A	R	A	L	V	G	L	W	D	S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A
Query Conservation																							.
Alig confidence																							.					.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		R	E	N	Q	D	S	V	K	T	Y	A	L	E	S	I	N	N	V	V	D	Q	L	W	S	E	I	.	.	.	.	S	N	E	L	P	D	I	E	A	L	Y	D	.	.	.	.	.	.	.	.	D	D	T	F	S	D	R	E	X	A
Template Known Secondary structure		T	S	S																								.	.	.	.		T	T									S	.	.	.	.	.	.	.	.		T	T		T	T
Template Predicted Secondary structure																												.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																	.																																							.	.	.	.	.	.
Query SS confidence																	.																																							.	.	.	.	.	.
Query Sequence		S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	.	V	M	V	L	A	V	P	I	A	V	K	F	L	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	.	.	.	.	.	.
Query Conservation																	.																																							.	.	.	.	.	.
Alig confidence																	.																																							.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	I	A	S	K	V	Y	Y	N	L	G	E	Y	E	S	A	V	K	Y	A	L	A	A	K	D	R	F	D	I	D	E	K	S	Q	F	V	E	T	I	V	S	K	S	I	E	X	Y	V	Q	E	A	S	K	Q	Y	T	K	D	E
Template Known Secondary structure													T													G	G	G	S		T	T	S		S																										T
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
									163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																				.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	V	L	P	A	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	Y	T	K	D	I	I	D	P	K	L	T	S	I	F	E	R	X	I	E	K	C	L	K	A	S	E	L	K	L	A	L	G	I	A	L	E	G	Y	R	L	D	I	I	E	S	A	L	K	S	K	L	D	Q	S	T	S	E	N
Template Known Secondary structure		T	G	G	G	S	S		S																			T												T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
													188	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	Y	E	K	Q	P	Q	P	I	.	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.										.																																			.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		V	K	I	I	N	Y	L	L	T	L	A	I	T	T	V	T	N	S	K	F	R	S	S	I	L	R	K	S	F	D	F	L	X	N	X	P	N	C	D	Y	L	T	L	N	K	V	V	V	N	L	N	D	A	G	L	.	.	.	.	.
Template Known Secondary structure															T																					S	S	S														T					.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	C	V	P	F	L	I	R	N	L	K	D	S	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	L	Q	L	F	K	K	L	K	E	E	N	D	E	G	L	S	A	Q	I	A	F	D	L	V	S	S	A	S	Q	Q	L	L	E	I	L	V	T
Template Known Secondary structure		.	.										T	T																	S
Template Predicted Secondary structure		.	.
Template SS confidence
				238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D