Job Description A1A535 Confidence 34.85% Date Wed Jul 10 14:03:03 BST 2013 Rank 166 Aligned Residues 311 % Identity 12% Template c4a0cB_ PDB info PDB header:cell cycle Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1; PDBTitle: structure of the cand1-cul4b-rbx1 complex Resolution 3.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	S	L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	T	E	S	I	E	K	H	A	R	A	L	V	G	L	W	D	S
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																						.	.	.
Template Conservation																					.	.	.	.	.	.	.																						.	.	.
Template Sequence		E	Y	Q	V	E	T	I	V	D	T	L	C	T	N	M	L	S	D	K	.	.	.	.	.	.	.	E	Q	L	R	D	I	S	S	I	G	L	K	T	V	I	G	E	L	P	P	G	.	.	.	S	A	L	A	A	N	V	C	K	K
Template Known Secondary structure															T	T	T		S	S	.	.	.	.	.	.	.	T	T													G	G	G	S				.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	.	.	T	P	V	M	V	L	A	V	P	I	A	V	K	F	L	H	R	G	S	K	E	L	C	R
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		I	T	G	R	L	T	S	A	I	A	K	Q	E	D	V	S	V	Q	L	E	A	L	D	I	M	A	D	M	L	S	R	Q	G	G	L	L	V	N	F	H	P	S	I	L	T	C	L	L	P	Q	L	T	S	P	R	L	A	V	R	K
Template Known Secondary structure											S		T	T	S	T	T	S													T	T	S		G	G	G	T	T	T									G	G	G	S	S		S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		147	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure					.																																.	.	.	.	.
Query SS confidence					.																																.	.	.	.	.
Query Sequence		N	M	S	.	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	.	.	.	.	.	L	L	R	V	L	P	A	V	Y	E	K	Q	P	Q	P	I	N	R	H	L
Query Conservation					.																																.	.	.	.	.
Alig confidence					.																																.	.	.	.	.
Template Conservation
Template Sequence		R	T	I	I	A	L	G	H	L	V	M	S	C	G	N	I	V	F	V	D	L	I	E	H	L	L	S	E	L	S	K	N	D	S	M	S	T	T	R	T	Y	I	Q	C	I	A	A	I	S	R	Q	A	G	H	R	I	G	E	Y	L
Template Known Secondary structure														S		T	T															S		S																				S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		201	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.
Predicted Secondary structure										.	.	.	.																																							.	.	.	.	.	.	.
Query SS confidence										.	.	.	.																																							.	.	.	.	.	.	.
Query Sequence		A	E	L	L	A	L	M	S	.	.	.	.	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R	N	L	K	.	.	.	.	.	.	.	D	S	T
Query Conservation										.	.	.	.																																							.	.	.	.	.	.	.
Alig confidence										.	.	.	.																							.																.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		E	K	I	I	P	L	V	V	K	F	C	N	V	D	D	D	E	L	R	E	Y	C	I	Q	A	F	E	S	F	V	R	R	C	P	.	K	E	V	Y	P	H	V	S	T	I	I	N	I	C	L	K	Y	L	T	Y	D	M	S	W	K
Template Known Secondary structure		G	T	T									T	S																				S	T	.	T				S										T	S
Template Predicted Secondary structure																																				.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																												.	.	.	.	.																											.	.	.
Query SS confidence																												.	.	.	.	.																											.	.	.
Query Sequence		Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M	.	.	.	.	.	L	K	E	I	A	E	Q	F	P	Y	L	T	G	Q	M	A	R	I	F	G	A	V	G	H	V	D	.	.	.
Query Conservation																												.	.	.	.	.																											.	.	.
Alig confidence																												.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		V	R	R	A	A	A	K	C	L	D	A	V	V	S	T	R	H	E	M	L	P	E	F	Y	K	T	V	S	P	A	L	I	S	R	F	K	E	R	E	E	N	V	K	A	D	V	F	H	A	Y	L	S	L	L	K	Q	T	R	P	E
Template Known Secondary structure																		G	G	G								T						T	G	G	G		S	S	S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
								302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	E	R	A	R	S	C	L	R	Y	L	V	S	Q	L	A	N	M	E	H	P	F	H	H	I	L	L	L	E	I	K	S	I	T	D	A	F	S	S	I	L	G	P	H	S	R	D	I	F
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	L	T	M	L	Q	S	Q	V	P	N	I	V	K	A	L	H	K	Q	M	K	E	K	S	V	K	T	R	Q	C	C	F	N	M	L	T	E	L	V	N	V	L	P	G	A	L	T	Q	H	I	P	V	L	V
Template Known Secondary structure																						T	T		S																			S	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D