Job Description A1A535 Confidence 87.71% Date Wed Jul 10 14:03:03 BST 2013 Rank 123 Aligned Residues 212 % Identity 15% Template c3tjzB_ PDB info PDB header:protein transport/protein binding Chain: B: PDB Molecule:coatomer subunit gamma; PDBTitle: crystal structure of arf1 bound to the gamma/zeta-cop core complex Resolution 2.90 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	V	M	.	V	L	A	V	P	I	A	V	K	F	L	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D
Query Conservation																						.
Alig confidence																						.																																						.
Template Conservation																																																												.
Template Sequence		H	I	L	T	K	I	L	Y	L	I	N	Q	G	E	H	L	G	T	T	E	A	T	E	A	F	F	A	M	T	K	L	F	Q	S	N	D	P	T	L	R	R	M	C	Y	L	T	I	K	E	M	S	C	I	A	E	D	V	I	.	I
Template Known Secondary structure														T																	G	G	G	G																		T	T	T	S	S		G	G	.	G
Template Predicted Secondary structure																																																												.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	L	.	.	.	.	L	R	V	L	P	A	V	Y	E	K	Q	P	Q	P	I	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.								.	.
Template Conservation																													.	.
Template Sequence		V	T	S	S	L	T	K	D	M	T	G	K	E	D	S	Y	R	G	P	A	V	R	A	L	C	Q	I	.	.	T	D	S	T	M	L	Q	A	I	E	R	Y	M	K	Q	A	I	V	D	K	V	P	S	V	S	S	S	A	L	V	S
Template Known Secondary structure		G										S	S																.	.			T	T	T													T		S	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R	N	L	K	D	S	.	.	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M	L	K	E	I
Query Conservation																													.	.
Alig confidence											.																		.	.
Template Conservation											.
Template Sequence		S	L	H	L	L	K	C	S	F	.	D	V	V	K	R	W	V	N	E	A	Q	E	A	A	S	S	D	N	I	M	V	Q	Y	H	A	L	G	L	L	Y	H	V	R	K	N	D	R	L	A	V	S	K	M	I	S	K	F	T	R	H
Template Known Secondary structure						T	T	T			.					T	T								T	T		S	S																T	T														S	S
Template Predicted Secondary structure											.
Template SS confidence
		163	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	F	P	Y	L	T	G	Q	M	A	R	I	F	G	A	V	G	H	V	D	E	E	R	A	R	S	C	L	R	Y	L	V	S	Q	L	A	N	M	E	H	P	F	H	H	I	L	L	L	E	I	K	S	I	T	D	A	F	S
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	K	S	P	F	A	Y	C	M	M	I	R	V	A	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	C	L	R	N	K	H	E	M	V	V	Y	E	A	A	S	A	I	V	N	A	V	S
Template Known Secondary structure				S													T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S												T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.																				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		291	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D