Job Description A1A535 Confidence 34.58% Date Wed Jul 10 14:03:03 BST 2013 Rank 167 Aligned Residues 200 % Identity 18% Template c3gq2B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain Resolution 2.18 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	S	I	E	K	H	A	R	A	L	V	G	L	W	D	S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	V	M	V	L	A	V	P
Query Conservation
Alig confidence						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		A	E	T	I	.	.	.	.	Q	K	L	C	D	R	V	A	S	S	T	L	L	D	D	R	R	N	.	.	.	.	.	.	.	.	.	.	.	A	V	R	A	L	K	S	L	S	K	K	Y	.	R	L	E	V	G	I	Q	A	M	E
Template Known Secondary structure		T				.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.												T	.
Template Predicted Secondary structure						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.												.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.
		132	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		I	A	V	K	F	L	H	R	G	S	K	.	.	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	L	L	R	V	L	P	A	V	Y
Query Conservation													.	.
Alig confidence													.	.																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	L	I	H	V	L	Q	T	D	R	S	D	S	E	I	I	G	Y	A	L	D	T	L	Y	N	I	I	S	N	D	E	E	.	.	.	D	L	G	S	Q	F	T	E	I	F	I	K	Q	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T																			S			.	.	.												S	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		E	K	Q	P	Q	P	I	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K	.	.	.	.	.	.	.	C	V	P	F	L	I
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																			.						.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																			.
Template Sequence		.	.	.	.	.	.	.	Q	E	N	V	T	L	L	L	S	L	L	E	E	F	D	F	H	V	R	W	P	G	V	K	L	L	T	S	L	L	K	Q	L	G	.	P	Q	V	Q	Q	I	I	L	V	S	P	M	G	V	S	R	L	M
Template Known Secondary structure		.	.	.	.	.	.	.	T											T																					S		.										S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																			.
Template SS confidence
									121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		243	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		R	N	L	K	D	.	.	S	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M	L	K	E	I	A	E	Q	F	P	Y	L	T	G	Q	M	A	R	I	F	G	A	V	G	H	V
Query Conservation							.	.
Alig confidence							.	.																				.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		D	L	L	A	D	S	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	R	S	N	G	.	.	.	.	.	.	.	.	A	I	Q	K	I	V	A	F	E	N	A	F	E	R	L	L	D	I	I	T	E	E	G	N	S	D
Template Known Secondary structure		G	G	G	T		S	S																T	T			.	.	.	.	.	.	.	.									T	T												T	T	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.									.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	E	R	A	R	S	C	L	R	Y	L	V	S	Q	L	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	I	V	V	E	D	C	L	I	L	L	Q	N	L	L	K	N
Template Known Secondary structure		S																T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D