Job Description A1A535 Confidence 55.38% Date Wed Jul 10 14:03:03 BST 2013 Rank 149 Aligned Residues 308 % Identity 13% Template c3gb8A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:exportin-1; PDBTitle: crystal structure of crm1/snurportin-1 complex Resolution 2.90 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	T	E	S	.	.	.	.	I	E	K	H	A	R	A	L	V	G	L	W	D
Query Conservation																																													.	.	.	.
Alig confidence																		.	.	.	.																								.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		I	D	E	I	L	N	N	I	N	T	I	I	C	D	L	Q	.	.	.	.	P	Q	Q	V	H	T	F	Y	E	A	V	G	Y	M	I	G	A	Q	T	D	Q	T	V	Q	E	H	L	I	E	K	Y	M	L	L	P	N	Q	V	W	D
Template Known Secondary structure							T	T						T	T	S		.	.	.	.																	T			S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.					.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	.	.	.	.	.	L	Q	N	Y	N	R	T	P	V	M	V	L	A	V	P	I	A	V	K	F	L	H	R	G	S	K
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.
Template Conservation
Template Sequence		S	I	I	Q	Q	A	T	K	N	V	D	I	L	K	D	P	E	T	V	K	Q	L	G	S	I	L	K	T	N	V	R	A	C	K	A	V	G	H	P	F	V	I	Q	L	G	R	I	Y	L	D	M	L	N	V	Y	K	C	L	S	E
Template Known Secondary structure											G	G	G	G	G																								G	G	G
Template Predicted Secondary structure
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	L	L	R	V	L	P	A	V	Y	E	K	Q	P	Q	P	I	N	R	H	L	A	E
Query Conservation
Alig confidence																																					.	.	.
Template Conservation																																					.	.	.
Template Sequence		N	I	S	A	A	I	Q	A	N	G	E	M	V	T	K	Q	P	L	I	R	S	M	R	T	V	K	R	E	T	L	K	L	I	S	G	.	.	.	W	V	S	R	S	N	D	P	Q	M	V	A	E	N	F	V	P	P	L	L	D	A
Template Known Secondary structure								T	T	T		G	G	G	G	T	S																				.	.	.															T
Template Predicted Secondary structure																																					.	.	.
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.				.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	.	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R	N	L	K	D	S	T	Y	N	D	I	I	L	N	I	L	I	E	I
Query Conservation																	.
Alig confidence																	.														.																	.	.	.	.	.
Template Conservation																															.																	.	.	.	.	.
Template Sequence		V	L	I	D	Y	Q	R	N	V	P	A	A	R	E	P	E	V	L	S	T	M	A	I	I	V	N	K	L	G	.	G	H	I	T	A	E	I	P	Q	I	F	D	A	V	F	E	.	.	.	.	.	C	T	L	N	M	I	N	K	D
Template Known Secondary structure									S		G	G	G																	G	.	G	G	T	G	G	G											.	.	.	.	.								S
Template Predicted Secondary structure																															.																	.	.	.	.	.
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.		.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.						.	830	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	H	E	P	L	A	L	N	S	F	L	P	M	L	K	E	I	A	E	Q	F	P	Y	L	T	G	Q	M	A	R	.	.	.	.	.	.	.	.	.	I	F	G	A	V	G	H	V	D	E	E	R	A	R	S	C	L	R	Y	L
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	E	Y	P	E	H	R	T	N	F	F	L	L	L	Q	A	V	N	S	H	C	F	P	A	F	L	A	I	P	P	T	Q	F	K	L	V	L	D	S	I	I	W	A	F	K	H	T	M	R	N	V	A	D	T	G	L	Q	I	L
Template Known Secondary structure		T	T																					T	T					S																		S	S	S
Template Predicted Secondary structure
Template SS confidence
		838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.												.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	Q	L	A	N	M	E	H	P	.	.	.	.	.	.	.	.	.	.	.	F	H	H	I	L	L	L	E	I	K	S	I	T	D	A	F	S	S	I	L	G	P	H	S	R	D	I	F	R	M
Query Conservation												.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	L	L	Q	N	V	A	Q	E	E	A	A	A	Q	S	F	Y	Q	T	Y	F	C	D	I	L	Q	H	I	F	S	V	V	T	D	T	S	H	T	A	G	L	T	M	H	A	S	I	L	A	Y
Template Known Secondary structure									T	T																										S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		898	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D