Job Description A1A535 Confidence 28.74% Date Wed Jul 10 14:03:03 BST 2013 Rank 174 Aligned Residues 105 % Identity 10% Template c3cljA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:protein nrd1; PDBTitle: structure of the rna polymerase ii ctd-interacting domain of nrd1 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	T	E	S	I	E	K	H	A	R	A	L	V	G	L	W	D	S	C	L
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	Q	N	F	V	A	T	L	E	S	F	K	D	L	K	S	G	I	S	G	S	R	I	K	K	L	T	T	Y	A	L	D	H	I	.	.	.	.	.	.	.	.	.	.	.	D	I	E	S	K	I	I	S	L	I	I	D	Y	S
Template Known Secondary structure												G	G	G	G		S	S	S																T	G	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40												.	.	.	.	.	.	.	.	.	50	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	M	V	L	A	V	P	I	A	V
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	R	L	C	P	D	S	H	K	L	G	S	L	Y	I	I	D	S	I	G	R	A	Y	L	D	E	T	R	S	N	S	N	K	P	G	T	C	A	H	A	I	N	T	L	G	E	V	I	Q	E	L	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.			S		G	G	G																					T				S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	L	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	I	A	K	S	N	Q	D	H	K	E	K	I	R	M	L	L	D	I
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D