Job Description A1A535 Confidence 35.10% Date Wed Jul 10 14:03:03 BST 2013 Rank 165 Aligned Residues 180 % Identity 18% Template c3a6pA_ PDB info PDB header:protein transport/nuclear protein/rna Chain: A: PDB Molecule:exportin-5; PDBTitle: crystal structure of exportin-5:rangtp:pre-mirna complex Resolution 2.92 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		E	D	S	L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	.	.	.	.	.	R	E	T	E	S	I	E	K	H	A	R	A	L	V
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.
Template Conservation
Template Sequence		K	T	S	F	Q	M	A	G	E	W	L	K	Y	Q	L	S	T	F	S	L	C	S	V	F	S	P	S	F	V	Q	W	E	A	M	T	L	F	L	E	S	V	I	T	Q	M	F	R	T	L	N	R	E	E	I	P	V	N	D	G	I
Template Known Secondary structure																	T					S		S	S	S																								S		T	T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																				.	.
Query SS confidence																																					.	.	.	.																				.	.
Query Sequence		G	L	W	D	S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	L	Q	.	.	.	.	N	Y	N	R	T	P	V	M	V	L	A	V	P	I	A	V	K	F	L	.	.
Query Conservation																																					.	.	.	.																				.	.
Alig confidence											.	.	.	.	.	.	.	.	.																		.	.	.	.																				.	.
Template Conservation											.	.	.	.	.	.	.	.	.
Template Sequence		E	L	L	Q	M	V	L	N	F	.	.	.	.	.	.	.	.	.	D	T	K	D	P	L	I	L	S	C	V	L	T	N	V	S	A	L	F	P	F	V	T	Y	R	P	E	F	L	P	Q	V	F	S	K	L	F	S	S	V	T	F
Template Known Secondary structure											.	.	.	.	.	.	.	.	.			S																G	G	G	G	G	T		G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.										.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
												138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	L	L	R	V	L	P	A
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	V	E	E	S	K	A	P	R	T	R	A	V	R	N	V	R	R	H	A	C	S	S	I	I	K	M	C	R	D	Y	P	Q	L	V	L	P	N	F	D	M	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		S	T	T	S																													G	G	G						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		V	Y	E	K	Q	P	Q	P	I	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	.	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R
Query Conservation																																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	N	H	V	K	Q	L	L	S	N	E	L	L	L	T	Q	M	E	K	C	A	L	M	E	A	L	V	L	I	S	N	Q	F	K	N	Y	E	R	Q	K	V	F	L	E	E	L	M	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.									S	T	T	T	S																	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D