Job Description A1A535 Confidence 71.33% Date Wed Jul 10 14:03:03 BST 2013 Rank 143 Aligned Residues 278 % Identity 12% Template c2qnaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:importin subunit beta-1; PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65) Resolution 2.84 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	D	S	L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	T	E	S	I	E	K	H	A	R	A	L	V	G	L	W	D
Query Conservation
Alig confidence																						.	.	.	.																							.	.
Template Conservation																						.	.	.	.																							.	.
Template Sequence		L	S	S	S	F	E	L	I	V	Q	K	L	L	E	T	T	D	R	P	D	.	.	.	.	G	H	Q	N	N	L	R	S	S	A	Y	E	S	L	M	E	I	V	K	N	S	A	.	.	K	D	C	Y	P	A	V	Q	K	T	T	L
Template Known Secondary structure		T																T		T	T	.	.	.	.	T	T	G	G	G															S			.	.	G	G	G
Template Predicted Secondary structure																						.	.	.	.																							.	.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.					.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540			.	.	.	.	.	.	.	.	.	550	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	V	M	V	L	A	V	P	I	A	V	K	F	L	.	.	.	.	.	H	R	G	S	K
Query Conservation																																																				.	.	.	.	.
Alig confidence												.	.																																							.	.	.	.	.
Template Conservation												.	.
Template Sequence		V	I	M	E	R	L	Q	Q	V	L	.	.	Q	M	F	N	D	L	Q	S	L	L	C	A	T	L	Q	N	V	L	R	K	V	Q	H	Q	D	A	L	Q	I	S	D	V	V	M	A	S	L	L	R	M	F	Q	S	T	A	G	S	G
Template Known Secondary structure						T						.	.	T																				S																							S
Template Predicted Secondary structure												.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.			.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.
Query Sequence		E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	.	.	.	.	.	.	.	.	.	L	L	R	V	L	P	A	V	Y	E	K	Q	P
Query Conservation																																								.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	Q	E	D	A	L	M	A	V	S	T	L	V	E	V	L	G	G	E	F	L	K	Y	M	E	A	F	K	P	F	L	G	I	G	L	K	N	Y	A	E	Y	Q	V	C	L	A	A	V	G	L	V	G	D	L	C	R	A	L	Q
Template Known Secondary structure																			G	G	G	G	G	G	G																S	S																			G
Template Predicted Secondary structure
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		Q	P	I	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	.	.	.	.	.	.	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R	N	L	K	D
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																					.
Template Conservation																																													.
Template Sequence		S	N	I	I	P	F	C	D	E	V	M	Q	L	L	L	E	N	L	G	N	E	N	V	H	R	S	V	K	P	Q	I	L	S	V	F	G	D	I	A	L	A	I	G	.	G	E	F	K	K	Y	L	E	V	V	L	N	T	L	Q	Q
Template Known Secondary structure		G	G	G																		T	T	S		T	T																	G	.	G	G	G
Template Predicted Secondary structure																																													.
Template SS confidence
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.		.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
																			248	.	250	.	.	.	.	.	.	.	.	.	260	.	.															.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	E	P	L	A	L	N	S	F	L	P	M	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	Q	A	Q	V	D	K	S	D	Y	D	M	V	D	Y	L	N	E	L	R	E	S	C	L	E	A	Y	T	G	I	V	Q	G	L	K	G	D	Q	E	N	V	H	P	D	V	M	L	V	Q	P	R	V	E	F	I	L	S	F	I
Template Known Secondary structure				T					S	S																													S	S	S	S			G	G	G	G	G	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		742	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	I	A	E	Q	F	P	Y	L	T	G	Q	M	A	R	I	F	G	A	V	G	H	V	D	E	E	R	A	R	S	C	L	R	Y	L	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	H	I	A	G	D	E	D	H	T	D	G	V	V	A	C	A	A	G	L	I	G	D	L	C	T	A	F	G	K	D	V	L	K	L	V	E	A
Template Known Secondary structure								T	T																														T
Template Predicted Secondary structure
Template SS confidence
		802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D