Job Description A1A535 Confidence 79.01% Date Wed Jul 10 14:03:03 BST 2013 Rank 137 Aligned Residues 290 % Identity 10% Template c2ot8B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:transportin-1; PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex Resolution 3.10 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		S	L	D	D	A	E	I	E	D	S	L	T	E	A	L	E	Q	I	K	V	I	S	S	S	L	D	Y	Q	T	N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	.	.	.	.	.	.	T	E	S	I
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																												.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		H	L	N	K	P	E	Y	I	Q	M	L	M	P	P	L	I	Q	K	W	N	M	L	K	D	E	D	.	.	.	.	.	K	D	L	F	P	L	L	E	C	L	S	S	V	A	T	A	L	Q	S	G	F	L	P	Y	C	E	P	V	Y
Template Known Secondary structure		G	G		S																		S		T	T		.	.	.	.	.	T	T	S														S	S	G	G	G
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580						.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130
Predicted Secondary structure																																	.																								.	.	.	.
Query SS confidence																																	.																								.	.	.	.
Query Sequence		E	K	H	A	R	A	L	V	G	L	W	D	S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A	.	K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	V	M	V	L	A	.	.	.	.	V
Query Conservation																																	.																								.	.	.	.
Alig confidence																																	.																								.	.	.	.
Template Conservation
Template Sequence		Q	R	C	V	N	L	V	Q	K	T	L	A	Q	A	M	L	N	N	A	Q	P	D	Q	Y	E	A	P	D	K	D	F	M	I	V	A	L	D	L	L	S	G	L	A	E	G	L	G	G	N	I	E	Q	L	V	A	R	S	N	I	L
Template Known Secondary structure																						T	T	T	S					T																		G	G	G	G						T	S
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		P	I	A	V	K	F	L	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H	T	E	G	I	I	K	S	I	L	Q	G	N	A	M	.	.	.	.	.	.	.	.	L	L
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	M	Y	Q	C	M	Q	D	K	M	P	E	V	R	Q	S	S	F	A	L	L	G	D	L	T	K	A	C	F	Q	H	V	K	P	C	I	A	D	F	M	P	I	L	G	T	N	L	N	P	E	F	I	S	V	C	N	N	A	T
Template Known Secondary structure											S	S																							G	G	G											T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		R	V	L	P	A	V	Y	E	K	Q	P	Q	P	I	N	R	H	L	A	E	L	L	A	L	M	.	.	.	.	.	.	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A	K	R	K	D	V	E	V	V	Q	K
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																								.
Template Conservation																																																								.
Template Sequence		W	A	I	G	E	I	S	I	Q	M	G	I	E	M	Q	P	Y	I	P	M	V	L	H	Q	L	V	E	I	I	N	R	P	N	T	P	K	T	L	L	E	N	T	A	I	T	I	G	R	L	G	Y	V	C	P	.	Q	E	V	A	P
Template Known Secondary structure												G	G	G	G	G	G	G															T	T																						.				G	G
Template Predicted Secondary structure																																																								.
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.		.	.	.	.	.
		237	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.																															.
Query SS confidence											.	.	.	.	.	.	.																															.
Query Sequence		C	V	P	F	L	I	R	N	L	.	.	.	.	.	.	.	K	D	S	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M	.	L	K	E	I	A	E	Q	F	P	Y	L	T	G
Query Conservation											.	.	.	.	.	.	.																															.
Alig confidence											.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		M	L	Q	Q	F	I	R	P	W	C	T	S	L	R	N	I	R	D	N	E	E	K	D	S	A	F	R	G	I	C	T	M	I	S	V	N	P	S	G	V	I	Q	D	F	I	F	F	C	D	A	V	A	S	W	I	N	P	K	D	D
Template Known Secondary structure		G													T	T	S		S																T	T							T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	A	R	I	F	G	A	V	G	H	V	D	E	E	R	A	R	S	C	L	R	Y	L	V	S	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	D	M	F	C	K	I	L	H	G	F	K	N	Q	V	G	D	E	N	W	R	R	F	S	D	Q	F	P
Template Known Secondary structure																										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D