 |
| Job Description | A1A535 | | Confidence | 42.35% | Date | Wed Jul 10 14:03:03 BST 2013 |
| Rank | 157 | Aligned Residues | 85 |
| % Identity | 16% | Template | c2dx1A_ |
| PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 4; |
PDBTitle: crystal structure of rhogef protein asef
|
| Resolution | 2.36 Å |
|
 |
|   |   |
715 | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | |
|
|
. | . | . | . | . | . | . | . | 770 | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | Q | P | L | I | E | G | K | L | K | E | K | Q | V | R | W | K | F | I | K | R | W | K | T | R | Y | F | T | L | A | G | N | Q | L | L | F | Q | K | G | K | S | K | D | D | P | D | D | . |
. |
. |
P | P | I | E | L | S | K | V | Q | S |
| Query Conservation |   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |
|
|   |
|   |   |   | . | . | . |   |   |
|
|
|   |
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |
|
|
|   |
|   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
| Template Sequence |   |
S | E | L | I | Y | S | G | E | L | T | R | V | T | Q | P | Q | A | . |
. |
. |
K | S | Q | Q | R | X | F | F | L | F | D | H | Q | L | I | Y | C | K | K | D | L | L | R | R | D | V | L | Y | Y | K | G | R | L | D | X | D | G | L | E | V |
| Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
| S | S | S | S | . | . | . |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
| T | T |
| T | T |
|  |  |  |  |  |  |  |  | T | T | T |
|  |  |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
427 | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | |
|
|
. | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . |
|   |
|   |   |
772 | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | K | A | V | A | K | K | R | R | D | R | S | L | P | R | A | F | E | I | F | T | D | S | K | T | Y | V | F | K | A | K | D | E | K | N | A | E | E | W | L | Q | C | I | N | V | A |
| Query Conservation |   |
|
|
|
|   |   |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|
| Alig confidence |   |
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
| . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |
| Template Sequence |   |
V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | K | N | A | F | R | L | . |
. |
. |
. |
H | S | H | L | L | C | T | R | K | P | E | Q | K | Q | R | W | L | K | A | F | A | R | E |
| Template Known Secondary structure |   |
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
484 | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 490 | . | |
|
|
|
. | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|