Job Description A1A535 Confidence 97.84% Date Wed Jul 10 14:03:03 BST 2013 Rank 83 Aligned Residues 261 % Identity 11% Template c1w63A_ PDB info PDB header:endocytosis Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core Resolution 4.0 Å Model Dimensions (Å) X:65.200 Y:62.786 Z:38.493

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		N	N	N	D	Q	A	V	V	E	I	C	I	T	R	I	T	T	A	I	R	E	T	E	S	.	.	.	.	I	E	K	H	A	R	A	L	V	G	L	W	D	S	C	L	E	H	N	L	R	P	A	G	K	D	E	D	T	P	H	A
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.
Template Conservation
Template Sequence		N	E	K	N	H	G	V	L	H	T	S	V	V	L	L	T	E	M	C	E	R	S	P	D	M	L	A	H	F	R	K	L	V	P	Q	L	V	R	I	L	K	N	L	I	M	S	G	Y	S	P	E	H	D	V	S	G	I	S	D	P
Template Known Secondary structure		T																				S										T	T														S				T	T	T		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	S	D	I	M	S	C	I	L	Q	N	Y	N	R	T	P	V	M	V	L	A	V	P	I	A	V	K	F	L	H	R	G	S	K	E	L	C	R	N	M	S	N	Y	L	S	L	A	A	I	T	K	A	D	L	L	A	D	H
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	Q	V	R	I	L	R	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	L	G	R	N	D	D	D	S	S	E	A	M	N	D	I	L	A	Q	V	A	T	N	T	E	T	S	K	N	V	G
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T							T	T										T	S			S	S	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.																			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	G	I	I	K	S	I	L	Q	G	N	A	M	L	L	R	V	L	P	A	V	Y	E	K	Q	P	Q	P	I	N	R	H	L	A	E	L	L	A	L	M	S	Q	L	E	Q	T	E	Q	Y	H	L	L	R	L	L	H	V	A	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.											.
Template Conservation							.	.	.	.	.	.	.	.											.
Template Sequence		N	A	I	L	Y	.	.	.	.	.	.	.	.	E	T	V	L	T	I	M	D	I	K	.	S	E	S	G	L	R	V	L	A	I	N	I	L	G	R	F	L	L	N	N	D	K	N	I	R	Y	V	A	L	T	S	L	L	K	T	V
Template Known Secondary structure							.	.	.	.	.	.	.	.									S		.																		T		S	S	T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.											.
Template SS confidence
		286	.	.	.	290									.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		K	R	K	D	V	E	V	V	Q	K	C	V	P	F	L	I	R	N	L	K	D	S	T	Y	N	D	I	I	L	N	I	L	I	E	I	A	G	H	E	P	L	A	L	N	S	F	L	P	M	.	L	K	E	I	A	E	Q	F	P	Y
Query Conservation																																																			.
Alig confidence						.																																													.
Template Conservation						.
Template Sequence		Q	T	D	H	.	N	A	V	Q	R	H	R	S	T	I	V	D	C	L	K	D	L	D	V	S	I	K	R	R	A	M	E	L	S	F	A	L	V	N	G	N	N	I	R	G	M	M	K	E	L	L	Y	F	L	D	S	C	E	P	E
Template Known Secondary structure						.				G	G	G							G	G	G	S	S																		S	S	S	T
Template Predicted Secondary structure						.
Template SS confidence
		337	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	Q	M	A	R	I	F	G	A	V	G	H	V	D	E	E	R	A	R	S	C	L	R	Y	L	V	S	Q	L	A	N	M	E	H	P	F	H	H	I	L	L	L	E	I	K	S	I	T	D	A	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	A	D	C	A	S	G	I	F	L	A	A	E	K	Y	A	P	S	K	R	W	H	I	D	T	I	M	R	V	L	T	T	A	G	S	Y	V	R	D	D	A	V	P	N	L	I	Q	L	I	T	N	S	V
Template Known Secondary structure																S	S																		T	G	G	G	S		S	S												S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D