Job Description Q8K2K6 Confidence 67.76% Date Tue Jul 30 13:20:48 BST 2013 Rank 19 Aligned Residues 57 % Identity 16% Template c1y1yS_ PDB info PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Resolution 4.00 Å Model Dimensions (Å) X:59.062 Y:38.684 Z:40.513

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		M	A	A	S	A	K	R	K	Q	E	E	K	H	L	K	M	L	R	D	M	T	G	L	P	H	N	R	K	.	.	.	.	.	.	.	C	F	D	C	D	Q	R	G	P	T	Y	V	N	M	T	V	G	S	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	P	A	P	L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T
Template Known Secondary structure		T	S	S	S	S																T	S										T	T				S	S	S			S										S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
			47	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	V	C	T	S	C	S	G	S	L	R
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		F	C	T	C	E	A	C	G	N	R	W	K
Template Known Secondary structure						S	S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D