Job Description Q04736 Confidence 100.00% Date Wed Jul 10 14:37:29 BST 2013 Rank 48 Aligned Residues 308 % Identity 19% Template c4dn5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik) Resolution 2.50 Å

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		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	G	Y	Y	I	T	T	R	A	Q	F	D	T	L	Q	K	L	V	K	H	Y	T	E	H	A	D	G	L	C	H	K	L	T	T	V	C	P	T	V	K	P	Q	T	Q	G	L	A	K	D	A	W	E	I	P	R	E	S	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	S	V	S	S	G	Q	A	H	S	L	T	S	L	A	K	T	W	A	A	R	G	S	R	S	R	E	P	S	P	K	T	E	D	N	E	G	V	L	L	T	E	K	L	K	P	V	D	Y	E	Y	R	E	E	V	H	W	A	T
Template Known Secondary structure		T	T																					T	T	S							S										S	T	T	S			B	T	T	B			B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	E	V	K	L	G	Q	G	C	F	G	E	V	W	M	G	T	W	N	G	T	.	T	K	V	A	I	K	T	L	K	P	G	T	M	M	P	E	A	F	L	Q	E	A	Q	I	M	K	K	L	R	H	D	K	L	V	P	L	Y	A
Query Conservation																							.
Alig confidence																							.																.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		H	Q	L	R	L	G	R	G	S	F	G	E	V	H	R	M	E	D	K	Q	T	G	F	Q	C	A	V	K	K	V	R	L	E	V	F	R	A	.	.	.	.	E	E	L	M	A	C	A	G	L	T	S	P	R	I	V	P	L	Y	G
Template Known Secondary structure			S	S		S				S	S									T	T	T											T	T	T			T	.	.	.	.					T	T	S	S				T	T	B
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		336	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	V	S	E	.	E	P	I	Y	I	V	T	E	F	M	S	K	G	S	L	L	D	F	L	K	E	G	D	G	K	Y	L	K	L	P	Q	L	V	D	M	A	A	Q	I	A	D	G	M	A	Y	I	E	R	M	N	Y	I	H	R	D
Query Conservation						.
Alig confidence						.																							.	.
Template Conservation																													.	.
Template Sequence		A	V	R	E	G	P	W	V	N	I	F	M	E	L	L	E	G	G	S	L	G	Q	L	V	K	E	Q	.	.	G	C	L	P	E	D	R	A	L	Y	Y	L	G	Q	A	L	E	G	L	E	Y	L	H	S	R	R	I	L	H	G	D
Template Known Secondary structure						T	T										T	T		B									.	.	S	S																							T	T				S
Template Predicted Secondary structure																													.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	R	A	A	N	I	L	V	G	E	N	L	I	.	C	K	I	A	D	F	G	L	A	R	L	I	E	D	N	E	Y	T	A	R	Q	G	A	K	F	P	I	K	W	T	A	P	E	A	A	L	Y	G	R	F	T	I	K	S	D	V
Query Conservation															.
Alig confidence															.															.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		V	K	A	D	N	V	L	L	S	S	D	G	S	H	A	A	L	C	D	F	G	H	A	V	C	L	Q	I	.	.	.	.	.	.	.	.	.	P	G	T	E	T	H	M	A	P	E	V	V	L	G	R	S	C	D	A	K	V	D	V
Template Known Secondary structure			S	G	G	G					T	T	S									T	T							.	.	.	.	.	.	.	.	.		S		G	G	G							T	T					T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.										.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		W	S	F	G	I	L	Q	T	E	L	V	T	K	G	R	V	P	Y	P	G	M	V	N	R	E	V	L	E	Q	V	E	R	G	Y	.	.	R	M	P	C	P	Q	G	C	P	E	S	L	H	E	L	M	N	L	C	W	K	K	D	P
Query Conservation																																				.	.
Alig confidence														.																						.	.
Template Conservation														.
Template Sequence		W	S	S	C	C	M	M	L	H	M	L	N	.	G	C	H	P	W	T	Q	F	F	R	G	P	L	C	L	K	I	A	S	E	P	P	P	V	R	E	I	P	P	S	C	A	P	L	T	A	Q	A	I	Q	E	G	L	R	K	E	P
Template Known Secondary structure														.	S	S		T	T	T	T	T			S									S			G	G	G	G	S		T	T	S												S		S	S	T
Template Predicted Secondary structure														.
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	P	T	F	E	Y	I	Q	S	F	L	E	D	Y	F	T	A	T	E	P	Q	Y	Q	P	G	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	R	V	S	A	A	E	L	G	G	K	V	N	R	A	L	Q	Q	V	G	G	L	K	S	P	W	R	G
Template Known Secondary structure		T	S	S																		T	S	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D