Job Description Q04736 Confidence 100.00% Date Wed Jul 10 14:37:29 BST 2013 Rank 134 Aligned Residues 267 % Identity 27% Template c2y94A_ PDB info PDB header:transferase Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk Resolution 3.24 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																															.													.	.	.	.
Query SS confidence																															.													.	.	.	.
Query Sequence		D	A	W	E	I	P	R	E	S	L	R	L	E	V	K	L	G	Q	G	C	F	G	E	V	W	M	G	T	W	.	N	G	T	T	K	V	A	I	K	T	L	K	.	.	.	.	P	G	T	M	M	P	E	A	F	L	Q	E	A	Q
Query Conservation																															.													.	.	.	.
Alig confidence																															.													.	.	.	.
Template Conservation
Template Sequence		H	D	G	R	V	K	I	G	H	Y	I	L	G	D	T	L	G	V	G	T	F	G	K	V	K	V	G	K	H	E	L	T	G	H	K	V	A	V	K	I	L	N	R	Q	K	I	R	S	L	D	V	V	G	K	I	R	R	E	I	Q
Template Known Secondary structure				S					T	T											S	S	S								T	T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		I	M	K	K	L	R	H	D	K	L	V	P	L	Y	A	V	V	S	E	.	E	P	I	Y	I	V	T	E	F	M	S	K	G	S	L	L	D	F	L	K	E	G	D	G	K	Y	L	K	L	P	Q	L	V	D	M	A	A	Q	I	A
Query Conservation																					.
Alig confidence																					.																				.	.
Template Conservation																																									.	.
Template Sequence		N	L	K	L	F	R	H	P	H	I	I	K	L	Y	Q	V	I	S	T	P	S	D	I	F	M	V	M	E	Y	V	S	G	G	E	L	F	D	Y	I	.	.	C	K	N	G	R	L	D	E	K	E	S	R	R	L	F	Q	Q	I	L
Template Known Secondary structure				T	T				T	T	B										S	S										S	S							T	.	.	T	S	S	S	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	M	A	Y	I	E	R	M	N	Y	I	H	R	D	L	R	A	A	N	I	L	V	G	E	N	L	I	C	K	I	A	D	F	G	L	A	R	L	I	E	D	N	E	Y	T	A	R	Q	G	A	K	F	P	I	K	W	T	A	P
Query Conservation
Alig confidence																																																							.	.
Template Conservation																																																							.	.
Template Sequence		S	G	V	D	Y	C	H	R	H	M	V	V	H	R	D	L	K	P	E	N	V	L	L	D	A	H	M	N	A	K	I	A	D	F	G	L	S	N	M	M	S	D	G	E	F	L	R	S	C	G	S	P	N	.	.	Y	A	A	P	E
Template Known Secondary structure									T	T	T				S			S	G	G	G					T	T									S	S						T	T			B				S		S	T	.	.	T
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	L	Y	G	R	F	T	I	K	S	D	V	W	S	F	G	I	L	Q	T	E	L	V	T	K	G	R	V	P	Y	P	G	M	V	N	R	E	V	L	E	Q	V	E	R	G	Y	R	M	P	C	P	Q	G	C	P	E	S	L
Query Conservation
Alig confidence																												.																					.
Template Conservation																												.																					.
Template Sequence		V	I	S	G	R	L	Y	A	G	P	E	V	D	I	W	S	S	G	V	I	L	Y	A	L	L	C	.	G	T	L	P	F	D	D	D	H	V	P	T	L	F	K	K	I	C	D	G	.	I	F	Y	T	P	Q	Y	L	N	P	S	V
Template Known Secondary structure				T	T			B		S																		.	S	S		S	S			S	S	S									T	T	.						T	T
Template Predicted Secondary structure																												.																					.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	L	M	N	L	C	W	K	K	D	P	D	E	R	P	T	F	E	Y	I	Q	S	F	L	E	D	Y	F	T	A	T	E	P	Q	Y	Q	P	G	E	N
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		I	S	L	L	K	H	M	L	Q	V	D	P	M	K	R	A	T	I	K	D	I	R	E	.	.	H	E	W	F	K	Q	D	L	P	K	Y	L	F	P	E	D
Template Known Secondary structure									T		S	S	T	T	T	S								T	.	.						T	T			T	T	T	T	T	S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D