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Job DescriptionA2A5Z6
Confidence99.78%DateWed Jul 10 14:17:52 BST 2013
Rank20Aligned Residues119
% Identity17%Templatec3l9bA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a
Resolution1.95 Å
Model Dimensions (Å)X:50.938 Y:43.356 Z:39.038

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNT. LDPKWNQHYDLYIG
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Template Sequence  MALIVHLKTVSELR. . . . . GRADRIAKVTFRG. . QSFYSRVLENCEDVADFDETFRWPVA
Template Known Secondary structure  S

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Query Sequence  K. . . . SDSVTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCKLGPNDND
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Template Sequence  SSIDRNEVLEIQIFNYSKVFSNK. . . LIGTFRMVLQKVVEEN. RVEVSDTLIDDN. . . NA
Template Known Secondary structure  S


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   54.....60.........70...... ...80.........90.. .......100.... ..
 
   127..130.........140....
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Query Sequence  TVRGQIVVSLQSRDRIGT
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Template Sequence  IIKTSLSMEVRYQAADGT
Template Known Secondary structure  TT

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   107..110.........120....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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