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Job DescriptionA2A5Z6
Confidence100.00%DateWed Jul 10 14:17:52 BST 2013
Rank2Aligned Residues373
% Identity97%Templatec1zvdA_
PDB info PDB header:ligaseChain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: regulation of smurf2 ubiquitin ligase activity by anchoring the e2 to2 the hect domain
Resolution2.10 Å
Model Dimensions (Å)X:67.911 Y:73.537 Z:53.959

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   369370.........380.........390.........400.........410.........420........
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Query Sequence  KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG
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Template Sequence  KRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVXKXRPKDLWKRLXIKFRG
Template Known Secondary structure 

SS
SS

STTTS
GGGGGSTT
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   369370.........380.........390.........400.........410.........420........
 
   429430.........440.........450.........460.........470.........480........
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Query Sequence  EEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGR
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Template Sequence  EEGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGR
Template Known Secondary structure 


S
TSGGGSSTT
TTGGGSTT
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   429430.........440.........450.........460.........470.........480........
 
   489490.........500.........510.........520.........530.........540........
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Query Sequence  IMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGVLDHT
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Template Sequence  IXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWILENDITGVLDHT
Template Known Secondary structure  TT







TT



STT
S

TTTS


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   489490.........500.........510.........520.........530.........540........
 
   549550.........560.........570.........580.........590.........600........
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Query Sequence  FCVEHNAYGEIIQHELKPNGKSIPVTEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEV
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Template Conservation 
             

   
    

  
   

       
          

 

  
Template Sequence  FCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEV
Template Known Secondary structure  STTSSTT





TTTTTTTT
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   549550.........560.........570.........580.........590.........600........
 
   609610.........620.........630.........640.........650.........660........
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Query Sequence  IPQHLLKTFDEKELELIICGLGKIDVSDWKVNTRLKHCTPDSNVVKWFWKAVEFFDEERR
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Template Conservation       
  
   

  



   

   
            
  
  

 

   
 
  
Template Sequence  IPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERR
Template Known Secondary structure  S
GGGGTT


BSS

TSS
TTSS
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   609610.........620.........630.........640.........650.........660........
 
   669670.........680.........690.........700.........710.........720........
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Query Sequence  ARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESY
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Template Conservation    

 
 

  


  
   
                    

 
 


  
 

 
 
 
Template Sequence  ARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESY
Template Known Secondary structure  S
SSB
TT
GGG
TT





TTS

GGGT


SS
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   669670.........680.........690.........700.........710.........720........
 
   729730.........740.
Predicted Secondary structure 
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Query Sequence  EKLYEKLLTAIEE
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Template Conservation 
 
 


  

 
Template Sequence  EKLYEKLLTAIEE
Template Known Secondary structure 

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   729730.........740.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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