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Job DescriptionA2A5Z6
Confidence100.00%DateWed Jul 10 14:17:52 BST 2013
Rank1Aligned Residues411
% Identity53%Templatec3olmA_
PDB info PDB header:ligaseChain: A: PDB Molecule:e3 ubiquitin-protein ligase rsp5; PDBTitle: structure and function of a ubiquitin binding site within the2 catalytic domain of a hect ubiquitin ligase
Resolution2.50 Å
Model Dimensions (Å)X:86.043 Y:69.281 Z:58.136

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   295....300.........310.........320.........330.........340.........350....
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Query Sequence  ELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNRQNQLKDQQQQQVVP
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Template Sequence  QLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQN. . . . . . . . . . . . . . . . .
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TT




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TTTTSS
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   385....390.........400.........410.........420.......
 
   355....360.........370.........380.........390.........400.........410....
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Query Sequence  LCPDDTECLTVPRYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMR
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Template Sequence  . . . . . . . . . . VPQYKRDFRRKVIYFRSQPAL. RILPGQCHIKVRRKNIFEDAYQEIMRQT
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SSGGG.S

SS
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   428.430.........440........ .450.........460.........470......
 
   415....420.........430.........440.........450.........460.........470....
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Query Sequence  PKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA
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Template Sequence  PEDLKKRLMIKFDGEE. . . . . . . . REFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG
Template Known Secondary structure  TS
TT
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T
GGGSSSSSSS


GGGG
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   477..480.........490.. .......500.........510.........520........
 
   475....480.........490.........500.........510.........520.........530....
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Query Sequence  VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLV
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Template Sequence  INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLN
Template Known Secondary structure  GSTTTT





B
TT




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   537..540.........550.........560.........570.........580.........590......
 
   535....540.........550.........560.........570.........580.........590....
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Query Sequence  WILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTEENKKEYVRLYVNWRFLRGI
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Template Sequence  WMLENSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRV
Template Known Secondary structure  TTS

TTT


BSTTSSTTGGGSB

TTTTTTT
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   597..600.........610.........620.........630.........640.........650......
 
   595....600.........610.........620.........630.........640.........650....
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Query Sequence  EAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVSDWKVNTRLKHCTPDSNVVK
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Template Sequence  QEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQ
Template Known Secondary structure  TTS
TTS
T
B



TS

TTS
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   657..660.........670.........680.........690.........700.........710......
 
   655....660.........670.........680.........690.........700.........710....
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Query Sequence  WFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAH
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Template Sequence  WFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG. EVQQLPKSH
Template Known Secondary structure  S
S
S
B
TT
GGG
TT



S.
TTS

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   717..720.........730.........740.........750.........760...... ...770.....
 
   715....720.........730.........740..
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Query Sequence  TCFNRIDIPPYESYEKLYEKLLTAIEET
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Template Sequence  TCFNRVDLPQYVDYDSMKQKLTLAVEET
Template Known Secondary structure  GGGT



SST
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   776...780.........790.........800...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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