 |
Job Description | A2A5Z6 | Confidence | 99.71% | Date | Wed Jul 10 14:17:52 BST 2013 |
Rank | 32 | Aligned Residues | 106 |
% Identity | 25% | Template | c2chdA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:rabphilin-3a; |
PDBTitle: crystal structure of the c2a domain of rabphilin-3a
|
Resolution | 1.92 Å |
|
 |
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | V | K | L | R | L | T | V | L | C | A | K | N | L | V | K | K | D | F | F | R | L | P | D | P | F | A | K | V | V | V | . |
. |
. |
D | G | S | G | Q | C | H | S | T | D | T | V | K | N | T | L | D | P | K | W | N | Q | H | Y | D | L |
Query Conservation |   |
  |   |   |
|   |
|   |
|
|   |
|   |   |
|   |
|
|
|   |
|
|   |   |
|
|
|
|   |
|   |
| . | . | . |
|
|   |   |
|   |   |
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|
Template Sequence |   |
N | S | N | L | Q | C | T | I | I | R | A | K | G | L | K | P | M | D | S | N | G | L | A | D | P | Y | V | K | L | H | L | L | P | G | A | S | K | S | N | K | L | R | T | K | T | L | R | N | T | R | N | P | V | W | N | E | T | L | Q | Y |
Template Known Secondary structure |   |
G | T |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
| T | T | S |
|
|
|  |  |  |  |  |  |  |  | S |
|
| S | G | G | G |  |  |  |
|
|
|
|
| S |
| S | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
396 | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . |
  |
  |   |
68 | . | 70 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Predicted Secondary structure |   |
 |  |
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | I | G | K | S | D | . |
. |
. |
. |
. |
S | V | T | I | S | V | W | N | H | K | K | I | H | K | K | Q | G | A | G | F | L | G | C | V | R | L | L | S | N | A | I | N | R | L | K | D | T | G | Y | Q | R | L | D | L | C | K | L |
Query Conservation |   |
  |
|   |   |   |   | . | . | . | . | . |   |
|   |
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   | . | . | . |   |
|
|   |   |   |
|   |
|   |   |
|   |   |   |   | . |   |   |   |   |
|
|   |
|   |   |   |
Template Sequence |   |
H | G | I | T | E | E | D | M | Q | R | K | T | L | R | I | S | V | C | D | E | D | K | F | G | H | N | E | . |
. |
. |
F | I | G | E | T | R | F | S | L | K | K | L | K | A | N | Q | . |
R | K | N | F | N | I | C | L | E | R | V |
Template Known Secondary structure |   |
 | S |
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
| T | T | S |
|  |  | . | . | . |  |  |  |  |  |  |  |  | G | G | G |
|
| T | T |
| . |
|  |  |  |  |  |  |
| B |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
456 | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | |
|
|
. | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | |
. | 500 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|