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Job DescriptionA2A5Z6
Confidence99.85%DateWed Jul 10 14:17:52 BST 2013
Rank12Aligned Residues136
% Identity22%Templatec3nsjA_
PDB info PDB header:immune systemChain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin
Resolution2.75 Å
Model Dimensions (Å)X:93.325 Y:75.718 Z:42.872

  Insertion relative to template
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  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.....
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Query Sequence  GRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHY
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Template Sequence  PRQRGLAHLVVSNFRAEHLWG. DYTTATDAYLKVFFGG. . QEFRTGVVWNNNNPRWTDKM
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   408.410.........420........ .430.........440.... .....450.........460....
 
   66... 70.........80.........90.........100.........110.........120..
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Query Sequence  DLYI. . . GKSDSVTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCKLGP
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Template Sequence  DFENVLLSTGGPLRVQVWDADYGWDDD. . . LLGSCDRSPHSGFHEVT. . . . . . . . . . . . .
Template Known Secondary structure  TTT




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   465....470.........480.........490. ........500........
 
   123......130.........140 .........150.........160..
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Query Sequence  NDNDTVRGQIVVSLQSRD. RIGTGGQVVDCSRLFDNDLPDG
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Template Sequence  . . CELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDPPG
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   509510.........520.........530.........540.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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