Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5Z6
Confidence99.83%DateWed Jul 10 14:17:52 BST 2013
Rank15Aligned Residues127
% Identity18%Templatec3m7fB_
PDB info PDB header:signaling protein/ligaseChain: B: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: crystal structure of the nedd4 c2/grb10 sh2 complex
Resolution2.00 Å
Model Dimensions (Å)X:69.506 Y:42.542 Z:46.386

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40...... ...50.........60...
Predicted Secondary structure 
























....







Query SS confidence 






































. . . .
















Query Sequence  RNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQ. . . . CHSTDTVKNTLDPKWNQ
Query Conservation        
 
 

 
  
 


 

  



 
 


  
....  

 
 









Alig confidence 



















...















....
















Template Conservation      
 
 
 
  
  
   ...
  


  
 
            
 
   
  
 
 
Template Sequence  NDDTRVVRVKVIAGIGLAIL. . . GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE
Template Known Secondary structure 
TT
S



...



TTT



SS
SS
Template Predicted Secondary structure 








...
















Template SS confidence 



























































   115....120.........130.... .....140.........150.........160.........170.
 
   64.....70... ......80.........90.........100.........110.........120..
Predicted Secondary structure 



.



























Query SS confidence 









.
















































Query Sequence  HYDLYIGKSD. SVTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCKLGP
Query Conservation   
 
 
    . 
 
 
 
  
   
   



 
 
 
  
          
 
     
Alig confidence 









.









....

...



















...






Template Conservation   
 
 
      
 
 
 
 
....  ... 

   
 
  
        ...   
   
Template Sequence  EILFRVLPQRHRILFEVFDEN. . . . DD. . . FLGQVDVPLYPLPTEPYTFK. . . DFVLHPR
Template Known Secondary structure 
TTT


....
...S
S

B




...
B
S
Template Predicted Secondary structure 







....

...





...
Template SS confidence 



























































   175....180.........190..... .. ..200.........210....... ..220....
 
   123......130.........140.......
Predicted Secondary structure 















Query SS confidence 
























Query Sequence  NDNDTVRGQIVVSLQSRDRIGTGGQ
Query Conservation       
 
 
 
     
       
Alig confidence 
























Template Conservation         
 
 
 
 
 
   
 

Template Sequence  SHKSRVKGYLRLKMTYLPTHLPHPP
Template Known Secondary structure  STT



S








Template Predicted Secondary structure 













Template SS confidence 
























   235....240.........250.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D