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Job DescriptionA1L317
Confidence98.20%DateTue Jul 30 13:02:37 BST 2013
Rank22Aligned Residues294
% Identity9%Templatec3vkhA_
PDB info PDB header:motor proteinChain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of a functional full-length dynein motor domain
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   140.........150.........160.........170.........180.........190.........
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Query Sequence  SEKQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIE
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Template Sequence  EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ
Template Known Secondary structure  T
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   3273......3280.........3290.........3300.........3310.........3320.........3330..
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  DLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRKVLDEMTM
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Template Sequence  AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPAIIEAQEAVSTIKKKHLDEIK
Template Known Secondary structure  TTSGGGGGTTTTGGGTSTS

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   3333......3340.........3350.........3360.........3370.........3380.........3390..
 
   260.........270.........280.........290.........300.........310.........
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Query Sequence  TRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQ
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Template Sequence  SLPKPPTPVKLAMEAVCLMLGGKKLEWADIRKKIMEPNFITSIIN. . . . . . . . . . . . . . .
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TT




GGG
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   3393......3400.........3410.........3420.........3430.......
 
   320.........330.........340.........350.........360.........370.........
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Query Sequence  YEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEIELQSQLA
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Template Sequence  . YDTKKMMTPKIREAITKGYLEDPGFDYETVNRASKACGPLVKWATAQTYYSEILKLKQD
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TT


TTTTTT
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SGG
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   3438.3440.........3450.........3460.........3470.........3480.........3490......
 
   380.........390.........400.........410.........420.........430.........
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Query Sequence  LKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEYECLLNIKTRLEQ
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Template Sequence  EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ
Template Known Secondary structure  GTTS
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   3517..3520.........3530.........3540.........3550.........3560.........3570......
 
   440.........
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Query Sequence  EIETYRRLLN
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Template Sequence  QSENFNTQMS
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   3577..3580......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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