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Job DescriptionA1L317
Confidence63.34%DateTue Jul 30 13:02:37 BST 2013
Rank132Aligned Residues167
% Identity10%Templatec2p22C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:protein srn2; PDBTitle: structure of the yeast escrt-i heterotetramer core
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   123......130.........140.........150.........160.........170.........180..
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Query Sequence  GCGLGGVSGYDGGLLSGSEKQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGS
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Template Sequence  VVPSPGLPSKNIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIH. . . . .
Template Known Secondary structure  S











SSGGGS
TT
GGGGS

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   33......40.........50.........60.........70.........80.......
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  VKGGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLREC
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Template Sequence  . . . . . . . AFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYG
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   94.....100.........110.........120.........130.........140......
 
   243......250.........260........ .270.........280.........290.........300
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Query Sequence  LEADINGLRKVLDEMTMTRCDLEMQI. . EGLTEELVFLRKNHEEEMKCMQGSSGGDVTVE
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Template Sequence  DIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWD
Template Known Secondary structure  S
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T
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   147..150.........160.........170.........180.........190.........200......
 
   301
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Query Sequence  M
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Template Sequence  K
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   207
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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