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Job DescriptionA1L317
Confidence98.25%DateTue Jul 30 13:02:37 BST 2013
Rank20Aligned Residues304
% Identity12%Templatec2oexB_
PDB info PDB header:protein transportChain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain
Resolution2.58 Å
Model Dimensions (Å)X:58.629 Y:97.037 Z:49.480

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   148.150.........160.........170.........180.........190....... ..200.....
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Query Sequence  LNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSI. . IEDLKKQI
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Template Conservation 
       
     
   
  
             
                   
    
Template Sequence  VNRSIAQXREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLI
Template Known Secondary structure  TTTTGGGG

STTS

TTT
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   378.380.........390.........400.........410.........420.........430.......
 
   206...210.........220.........230.........240 .........250..
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Query Sequence  LSATCENARMTLQIDNARLAADDFRMKYEHELCLR. . . . . . . . . . . . . ECLEADINGLRK
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Template Conservation                      
                             
         
Template Sequence  KELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRT
Template Known Secondary structure  SSTT

S

T
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   438.440.........450.........460.........470.........480.........490.......
 
   253......260.........270.........280.........290....... ..300.........310.
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Query Sequence  VLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDV. TVEMNAAPGVDLTK
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Template Conservation   
         
             
                               
  
Template Sequence  VLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTXQGSEVVNVLKSLLS
Template Known Secondary structure  TTTS
TTS





TTTTT
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   498.500.........510.........520.........530.........540.........550.......
 
   312.......320......... 330.........340.........350.........360.........
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Query Sequence  LLNDMRAQYEAMAEQNRQ. . EAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQT
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Template Sequence  NLDEVKKEREGLENDLKSVNFDXTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQE
Template Known Secondary structure  T



SSS

T
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   558.560.........570.........580.........590.........600.........610.......
 
   370.........380.........390 .........400.........410.........420.......
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Query Sequence  LEIELQSQLALKCSLEGTLAD. . TEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEY
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Template Conservation         
                              
        

   
 
     
Template Sequence  SLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFY
Template Known Secondary structure  TTTS


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   618.620.........630.........640.........650.........660.........670.......
 
   428.430.........440.........450.
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Query Sequence  ECLLNIKTRLEQEIETYRRLLNGD
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Template Conservation    
   
  

  
 
    
  
Template Sequence  NELTEILVRFQNKCSDIVFARKTE
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   678.680.........690.........700.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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