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Job DescriptionA1L317
Confidence45.00%DateTue Jul 30 13:02:37 BST 2013
Rank174Aligned Residues226
% Identity11%Templatec2yfaA_
PDB info PDB header:receptorChain: A: PDB Molecule:methyl-accepting chemotaxis transducer; PDBTitle: x-ray structure of mcps ligand binding domain in complex with malate
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   193......200.........210...... ...220.........230......... 240....
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Query Sequence  QYYSIIEDLKKQILSATCENARMT. . . . . . LQIDNARLAADDFRMKYEHELCL. . RECLE
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Template Sequence  SHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENV
Template Known Secondary structure  TTT


S
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   48.50.........60.........70.........80.........90.........100.......
 
   245....250.........260.........270.........280.........290.........300....
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Query Sequence  ADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAA
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Template Sequence  KLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADS
Template Known Secondary structure  S
S
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   108.110.........120.........130.........140.........150.........160.......
 
   305....310.........320.........330.........340.........350.........360....
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Query Sequence  PGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELK
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Template Conservation          
    
 
   
     
               
  
      
   
    
Template Sequence  VRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSED
Template Known Secondary structure  S


GGG
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   168.170.........180.........190.........200.........210.........220.......
 
   365....370.........380.........390.........400.........410.........
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Query Sequence  RTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAE
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Template Conservation 
 
      
  
   
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Template Sequence  ARLQQFENAVLAYRDAVRQFRDAVAN. ITTSRAEMTVQGADIVKRSDALYQIQLE
Template Known Secondary structure  .T
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   228.230.........240.........250... ......260.........270.........280.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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