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Job DescriptionA1L317
Confidence98.65%DateTue Jul 30 13:02:37 BST 2013
Rank11Aligned Residues299
% Identity12%Templatec2oevA_
PDB info PDB header:protein transportChain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1
Resolution3.30 Å
Model Dimensions (Å)X:84.061 Y:90.791 Z:47.115

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   145....150.........160.........170.........180.
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Query Sequence  MQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHG. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK
Template Known Secondary structure  TTTTTTTS
SSTTS

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   361........370.........380.........390.........400.........410.........420
 
   182.......190.........200.........210.........220.........230......
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Query Sequence  SVKGGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHE. . . . .
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Template Sequence  SRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP
Template Known Secondary structure  TTTTTTSSSS

S

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   421........430.........440.........450.........460.........470.........480
 
   237..240.........250.........260.........270.........280.........290.....
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Query Sequence  . LCLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGG
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Template Sequence  SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPA
Template Known Secondary structure  SSTTTS
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   481........490.........500.........510.........520.........530.........540
 
   296 ...300.........310.........320.........330.........340.........350.
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Query Sequence  D. . . . VTVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAG
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Template Sequence  KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSK. FLTALAQDGVINEEAL
Template Known Secondary structure  SS
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   541........550.........560.........570.........580... ......590.........
 
   352.......360.........370.........380.........390.. .......400.........
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Query Sequence  EANCARSEVMELKRTVQTLEIELQSQLALKCSLEGTLADTE. . AGYVAQLSGIQAQISSL
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Template Sequence  SVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATA
Template Known Secondary structure  TS

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   600.........610.........620.........630.........640.........650.........
 
   410.........420.........430.........440....
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Query Sequence  EEQLSQIRAETQCQSAEYECLLNIKTRLEQEIETY
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Template Sequence  YDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI
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   660.........670.........680.........690....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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