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Job DescriptionA1L317
Confidence98.42%DateTue Jul 30 13:02:37 BST 2013
Rank15Aligned Residues306
% Identity10%Templatec4jioA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:bro1; PDBTitle: bro1 v domain and ubiquitin
Resolution3.60 Å
Model Dimensions (Å)X:88.455 Y:78.266 Z:38.822

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   133......140.........150.........160.........170.........180.........190..
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Query Sequence  DGGLLSGSEKQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYS
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Template Sequence  PFTEIYEKESIYSEEKAQLLRKEXESVETADLEYTSFVEFTNLPKLINDLAAAYTPQLEX
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   367..370.........380.........390.........400.........410.........420......
 
   193......200.........210.........220.........230.........240.........250..
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Query Sequence  QYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRK
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Template Sequence  XRDQIKSWAYAVQQNEFNDIERIINVISSKRKEILDILALPAEEKENILKLKASLVEASQ
Template Known Secondary structure  STTTTT
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   436...440.........450.........460.........470.........480.........490.....
 
   253......260.........270.........280.........290.........300.........310..
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Query Sequence  VLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKL
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Template Sequence  SDEKLFRLIKPYVAEIKLLCNDSSLWRKFDDSKTELILSKLKAITQFAEDLRLLKEERAR
Template Known Secondary structure  TTT




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   497..500.........510.........520.........530.........540.........550......
 
   313......320.........330.........340.........350.........360.........370..
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Query Sequence  LNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEI
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Template Conservation 
   
                                                       
Template Sequence  TXGELKDYVNNNDDITSLLLANKDKSDAELQSLFESELAKFEPLTTRIEATIFKQGSTIN
Template Known Secondary structure  SSS


GGG

STT

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   573......580.........590.........600.........610.........620.........630..
 
   373......380......... 390.........400.........410.........420.........430
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Query Sequence  ELQSQLALKCSLEGTLA. . DTEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEYECL
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Template Conservation                             
       
         
   
 
       
Template Sequence  GVKIELDNIFGLTGIQDKTPEEQKAELERKLFFDKLEEATTKFTIFSSDIQKGLNFYNSL
Template Known Secondary structure  S

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   633......640.........650.........660.........670.........680.........690..
 
   431.......
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Query Sequence  LNIKTRLE
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Template Conservation        

Template Sequence  LKXSKDLQ
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   693......700
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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