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Job DescriptionA1L317
Confidence36.91%DateTue Jul 30 13:02:37 BST 2013
Rank191Aligned Residues187
% Identity12%Templatec1av1B_
PDB info PDB header:lipid transportChain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of human apolipoprotein a-i
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   176...180.........190.........200..... ....210.........220.........230...
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Query Sequence  WYGKHGSVKGGSGRDYSQYYSIIEDLKKQI. LSATCENARMTLQIDNARLAADDFRMKY.
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Template Sequence  LLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ
Template Known Secondary structure  GGGTTTT
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   46...50.........60.........70.........80.........90.........100.....
 
   234.....240.........250.... .....260.........270..... ....280.........290.
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Query Sequence  EHELCLRECLEADINGLRKVL. DEMTMTRCDLEMQIEGLTEEL. VFLRKNHEEEMKCMQG
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Template Sequence  KKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAP
Template Known Secondary structure  TTTT
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   106...110.........120.........130.........140.........150.........160.....
 
   292....... 300.........310.........320.........330.........340.........
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Query Sequence  SSGGDVTV. . EMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSD
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Template Sequence  YSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESF
Template Known Secondary structure  TTTTSSS





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   166...170.........180.........190.........200.........210.........220.....
 
   350.........360..
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Query Sequence  AGEANCARSEVME
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Template Sequence  KVSFLSALEEYTK
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   226...230........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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