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Job DescriptionA1L317
Confidence97.92%DateTue Jul 30 13:02:37 BST 2013
Rank36Aligned Residues307
% Identity8%Templatec1hciB_
PDB info PDB header:triple-helix coiled coilChain: B: PDB Molecule:alpha-actinin 2; PDBTitle: crystal structure of the rod domain of alpha-actinin
Resolution2.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160.........170.........180..... ....190.....
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Query Sequence  KQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKG. . . . . . GSGRDYSQYY
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Template Conservation     
                           
   
                        
Template Sequence  EEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHE
Template Known Secondary structure  TT

GGGS

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   386...390.........400.........410.........420.........430.........440.....
 
   196...200.........210.........220.........230.........240.........250.....
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Query Sequence  SIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRKVLD
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Template Conservation                                          
                 
 
Template Sequence  AFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALE
Template Known Secondary structure  TT
TT
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   446...450.........460.........470.........480.........490.........500.....
 
   256...260.........270.........280.........290 .........300.......
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Query Sequence  EMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQ. . . . . . . . GSSGGDVTVEMNAAPGV
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Template Conservation                                                              
Template Sequence  RMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATL
Template Known Secondary structure  TT




SS
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   506...510.........520.........530.........540.........550.........560.....
 
   308.310.........320.........330.........340.........350.........360.......
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Query Sequence  DLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTV
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Template Conservation                                           
      
          
Template Sequence  PEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSL
Template Known Secondary structure  TTT

S
S

TT
SS
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   566...570.........580.........590.........600.........610.........620.....
 
   368.370.........380.........390.........400.........410.........420.......
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Query Sequence  QTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEY
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Template Conservation                             
      
          
         
  

Template Sequence  QEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNI
Template Known Secondary structure  S
S
TTTTST
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   626...630.........640.........650.........660.........670.........680.....
 
   428.430.........440........
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Query Sequence  ECLLNIKTRLEQEIETYRRLL
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Template Conservation        
  
      
 
  
Template Sequence  INYKNNIDKLEGDHQLIQEAL
Template Known Secondary structure  TT
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   686...690.........700......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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