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Job DescriptionA1L317
Confidence79.36%DateTue Jul 30 13:02:37 BST 2013
Rank111Aligned Residues173
% Identity14%Templatec3r2pA_
PDB info PDB header:lipid transportChain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: 2.2 angstrom crystal structure of c terminal truncated human2 apolipoprotein a-i reveals the assembly of hdl by dimerization.
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   264.....270.........280.........290.........300.........310.........320...
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Query Sequence  LEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQYEAM
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Template Sequence  WDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPV
Template Known Secondary structure  TTSTT



TT
S
SS

S
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   8.10.........20.........30.........40.........50.........60.......
 
   324.....330.........340.........350.........360.........370.........380...
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Query Sequence  AEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEIELQSQLALKCS
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Template Sequence  TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQE. . . . . . . . . EMELYRQK
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   68.70.........80.........90.........100.........110 ........
 
   384.....390.........400.........410... ......420.........430...... ...440.
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Query Sequence  LEGTLADTEAGYVAQLSGIQAQISSLEEQL. SQIRAETQCQSAEYECLLNIKTR. LEQEI
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Template Sequence  VEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARL
Template Known Secondary structure  TTTTTTS
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   119120.........130.........140.........150.........160.........170........
 
   442...
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Query Sequence  ETYR
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Template Conservation    

Template Sequence  EALK
Template Known Secondary structure  TT
Template Predicted Secondary structure 

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   179180..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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