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Job DescriptionA1L317
Confidence36.71%DateTue Jul 30 13:02:37 BST 2013
Rank192Aligned Residues216
% Identity13%Templatec2a01B_
PDB info PDB header:lipid transportChain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of lipid-free human apolipoprotein a-i
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.........230.........240.. .......250.........260....
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Query Sequence  MTLQIDNARLAADDFRMKYEHELCLREC. . . . . . . . . . LEADINGLRKVLDEMTMTRCDL
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Template Sequence  WDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPV
Template Known Secondary structure  STTTTTTT

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TTTTT
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   8.10.........20.........30.........40.........50.........60.......
 
   265.... 270.........280.........290...... ...300.........310.......
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Query Sequence  EMQIE. GLTEELVFLRKNHEEEMKCMQGSSGGD. . . . . . VTVEMNAAPGVDLTKLLNDMR
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Template Conservation    
           
        

                                   
Template Sequence  TQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQ
Template Known Secondary structure  TTTSS

GGG
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   68.70.........80.........90.........100.........110.........120.......
 
   318.320.........330.........340.........350.........360 .........370......
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Query Sequence  AQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEV. MELKRTVQTLEIELQS
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Template Conservation           
                   
                              
Template Sequence  EGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGA
Template Known Secondary structure  TSSS

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   128.130.........140.........150.........160.........170.........180.......
 
   377..380. ........390.........400.........410.........420.........430...
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Query Sequence  QLALK. CSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEYECLLNI
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Template Conservation     
           
   
    
 
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Template Sequence  RLAEYHAKATEHLSTLSEKAKPALEDLRQGL. . . LPVLESFKVSFLSALEEYTKKLNT
Template Known Secondary structure  TSSSSTT

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   188.190.........200.........210........ .220.........230.........240..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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