Return to main results Retrieve Phyre Job Id

Job DescriptionA1L317
Confidence26.88%DateTue Jul 30 13:02:37 BST 2013
Rank217Aligned Residues272
% Identity9%Templatec3tnfB_
PDB info PDB header:protein transportChain: B: PDB Molecule:lida; PDBTitle: lida from legionella in complex with active rab8a
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160.........170.........180.........190.........200.
Predicted Secondary structure 

Query SS confidence 



























































Query Sequence  KQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIEDL
Query Conservation 
  
  
   
     

  

  
  

  
                           
Alig confidence 



























































Template Conservation        
             
                                       
Template Sequence  IKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKD
Template Known Secondary structure  TTTTTTTTSTT




Template Predicted Secondary structure 
Template SS confidence 



























































   216...220.........230.........240.........250.........260.........270.....
 
   202.......210.........220.........230.........240..
Predicted Secondary structure  ...................
Query SS confidence 








































. . . . . . . . . . . . . . . . . . .
Query Sequence  KKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLREC. . . . . . . . . . . . . . . . . . .
Query Conservation     
     
   
  

  
           
        ...................
Alig confidence 








































...................
Template Conservation                                                              
Template Sequence  SEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLK
Template Known Secondary structure  TTSTT
S
S

TTSSSSGG
Template Predicted Secondary structure 
Template SS confidence 



























































   276...280.........290.........300.........310.........320.........330.....
 
   243......250.........260........
Predicted Secondary structure  ..................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LEADINGLRKVLDEMTMTRCDLEMQI
Query Conservation  ..................................

 

  
   
         
    
Alig confidence  ..................................

























Template Conservation                                                              
Template Sequence  DAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALI
Template Known Secondary structure  G
S
TT
STT

TTTTTTTTT
Template Predicted Secondary structure 
Template SS confidence 



























































   336...340.........350.........360.........370.........380.........390.....
 
   269270.........280.........290.........300.........310.........320..
Predicted Secondary structure  ......
Query SS confidence 





















































. . . . . .
Query Sequence  EGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQYEA. . . . . .
Query Conservation    
  

  
          
                   
   
         ......
Alig confidence 





















































......
Template Conservation                                                              
Template Sequence  HKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFF
Template Known Secondary structure 
S
TTS
Template Predicted Secondary structure 

Template SS confidence 



























































   396...400.........410.........420.........430.........440.........450.....
 
   323......330.........340.........350.
Predicted Secondary structure  ...............................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .




























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MAEQNRQEAERQFNERSASLQAQISSDAG
Query Conservation  ...............................                             
Alig confidence  ...............................




























Template Conservation                                                              
Template Sequence  NEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKD
Template Known Secondary structure 
TTS
SSGGG
STTSSS
TTTTSS

TT
Template Predicted Secondary structure 
Template SS confidence 



























































   456...460.........470.........480.........490.........500.........510.....
 
   352.......360.........370.........380.........390. ........400.........410
Predicted Secondary structure  .
Query SS confidence 







































.


















Query Sequence  EANCARSEVMELKRTVQTLEIELQSQLALKCSLEGTLADT. EAGYVAQLSGIQAQISSLE
Query Conservation   
     
              
         
   
   .                 

Alig confidence 







































.


















Template Conservation                   
       
      
         
     

    
  

 
Template Sequence  SPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIA
Template Known Secondary structure 
TT


B
T
Template Predicted Secondary structure 
Template SS confidence 



























































   516...520.........530.........540.........550.........560.........570.....
 
   411..
Predicted Secondary structure 
Query SS confidence 


Query Sequence  EQL
Query Conservation   

Alig confidence 


Template Conservation    
Template Sequence  NNI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 


   576..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D