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Job DescriptionA1L317
Confidence91.82%DateTue Jul 30 13:02:37 BST 2013
Rank80Aligned Residues215
% Identity5%Templatec2lemA_
PDB info PDB header:lipid transportChain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: monomeric mouse apoai(1-216)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.........210.........220.........230.........240....
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Query Sequence  GGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLE
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Template Sequence  DEPQSQWDKVKDFANVYVDAVKDSGRDYVSQFESSSLGQQLNLNLLENWDTLGSTVSQLQ
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   1........10.........20.........30.........40.........50.........60
 
   245....250.........260.........270.........280.........290.........300....
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Query Sequence  ADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAA
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Template Sequence  ERLGPLTRDFWD. . NLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKW. . . . . KEDVEL
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   61........70.. .......80.........90.........100....... ..110...
 
   305....310.........320.........330.........340.........350.........360....
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Query Sequence  PGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELK
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Template Sequence  YRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESL
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   114.....120.........130.........140.........150.........160.........170...
 
   365....370.........380.........390.........400......
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Query Sequence  RTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQI
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Template Sequence  AQRLAELKSNPTLNEYHSSAKSHLKSLGEKARPALEDLRHSL
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   174.....180.........190.........200.........210.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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