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Job DescriptionA1L317
Confidence96.97%DateTue Jul 30 13:02:37 BST 2013
Rank55Aligned Residues269
% Identity9%Templatec1f5nA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260.........270.........280.........290......
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Query Sequence  LCLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGD
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Template Sequence  MENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRS
Template Known Secondary structure 

SS
SS
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   312.......320.........330.........340.........350.........360.........370.
 
   297..300.........310.........320.........330. ........340.........350.....
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Query Sequence  VTVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEA. ERQFNERSASLQAQISSDAGEANC
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Template Conservation              
                                               
Template Sequence  SFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPG
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GGGTTTTSSTT
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   372.......380.........390.........400.........410.........420.........430.
 
   356...360.........370.........380.........390.........400.........410.....
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Query Sequence  ARSEVMELKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQ
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Template Conservation         
         
        
                       
         
Template Sequence  GYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEV
Template Known Secondary structure  SS


TTT
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   432.......440.........450.........460.........470.........480.........490.
 
   416...420.........430.........440.........450.........460.........470.....
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Query Sequence  IRAETQCQSAEYECLLNIKTRLEQEIETYRRLLNGDGGGCDYRNLVSKNVVLSDSGSCAG
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Template Conservation                                         
    
               
Template Sequence  ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA
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   492.......500.........510.........520.........530.........540.........550.
 
   476...480.........490.........500.....
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Query Sequence  QGKDPSKTRVTKTIIEEVVDGRVVSSQVSN
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Template Sequence  LKLQEQEQLLKEGFQKESRIMKNEIQDLQT
Template Known Secondary structure  T
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   552.......560.........570.........580.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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