Return to main results Retrieve Phyre Job Id

Job DescriptionA1L317
Confidence30.84%DateTue Jul 30 13:02:37 BST 2013
Rank206Aligned Residues157
% Identity14%Templatec3ntnB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:uspa1; PDBTitle: crystal structure of uspa1 head and neck domain from moraxella2 catarrhalis
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.......
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Query Sequence  GAVGSRGCTGGSSFGGGSSCGLGGGSAWGFQGSSNSWSLSGGSKGSMGGGFGSCSVRGGF
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Template Sequence  GIDNKANADNAVALGNKNTIEGENSVAIGSNNTVKKGQQNVFILGSNTDTTNAQNGSVLL
Template Known Secondary structure  S

STT

STT

TT

S
S
B
SS

TT
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   210.........220.........230.........240.........250.........260.........
 
   78.80.........90.........100.........110.........120.........130.......
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Query Sequence  GAASSYGGGSGFGGSSGFGGGSGFGGGSGFGGGSSGGFSSYGGSMGCGLGGVSGYDGGLL
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Template Sequence  GHNTAGKAATIVNSAEVGGLSLTGFAGASNGTVSVGKKGKERQIVHVGAGEISDTSTDAV
Template Known Secondary structure  T
B






S
TT


SS





SBTTB




S





STT

S

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   270.........280.........290.........300.........310.........320.........
 
   138.140.........150.........160.........170.......
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Query Sequence  SGSEKQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWY
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Template Sequence  NGSQLHA. . . LATVVAQNKADIKDLDDEVGLLGEEINKHH
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   333...... 340.........350.........360.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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