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Job DescriptionA1L317
Confidence88.96%DateTue Jul 30 13:02:37 BST 2013
Rank89Aligned Residues294
% Identity7%Templatec2j69D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   144.....150.........160.........170.........180.........190.........
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Query Sequence  TMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIE. . . .
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Template Conservation      
      
          
  
          
          
            
Template Sequence  RIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLG
Template Known Secondary structure  SSS
STTTT
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   353......360.........370.........380.........390.........400.........410..
 
   200.........210.........220.........230.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . DLKKQILSATCENARMTLQIDNARLAADDFRMKYEHEL
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Template Conservation                                                              
Template Sequence  NTFENDFLRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFK
Template Known Secondary structure  TTTTTT




GGGGGSTT
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   413......420.........430.........440.........450.........460.........470..
 
   238.240.........250.........260.........270.........280.........290.......
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Query Sequence  CLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDV
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Template Conservation                                                              
Template Sequence  ELSRSASQYGASYNQITDQITEKLTGKDVEEDNSPGWAKWAMGLLSAGFDWKNILLNYFT
Template Known Secondary structure  SS







TS



S
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   473......480.........490.........500.........510.........520.........530..
 
   298.300.........310.........320.........330.........340.........350.......
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Query Sequence  TVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCAR
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Template Conservation                                                     
        
Template Sequence  VIGIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQS
Template Known Secondary structure  TT
SSTTTTTTSS
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   554.....560.........570.........580.........590.........600.........610...
 
   358.360.........370.........380.........390.........400.........410.......
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Query Sequence  SEVMELKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIR
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Template Conservation    
     
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Template Sequence  QVVYNAVKECFDSYER. . . . . EVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLK
Template Known Secondary structure  .....S



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   614.....620......... 630.........640.........650.........660........
 
   418.420.........430.........440..
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Query Sequence  AETQCQSAEYECLLNIKTRLEQEIE
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Template Conservation       
   
  

     
 
 
 
Template Sequence  NLQEDVIAQLQKIEAAYSNLLAYYS
Template Known Secondary structure 
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   669670.........680.........690...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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