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Job DescriptionA1L317
Confidence97.54%DateTue Jul 30 13:02:37 BST 2013
Rank44Aligned Residues138
% Identity16%Templatec2ocyB_
PDB info PDB header:endocytosis/exocytosisChain: B: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: complex of the guanine exchange factor sec2p and the rab2 gtpase sec4p
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170....... ..180.........190.........200.
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Query Sequence  LNDRLANYLDKVRALEEANTDLECKIKDWY. . . . . . GKHGSVKGGSGRDYSQYYSIIEDL
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Template Sequence  LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRL
Template Known Secondary structure  TT
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   17..20.........30.........40.........50.........60.........70......
 
   202.......210.........220.........230......... 240.........250.........260
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Query Sequence  KKQILSATCENARMTLQIDNARLAADDFRMKYEHELCL. RECLEADINGLRKVLDEMTMT
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Template Conservation                                 
                        
   
Template Sequence  REDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNXVADARKEKYAIEILNKRLTEQ
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   77..80.........90.........100.........110.........120.........130......
 
   261........270.........280.....
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Query Sequence  RCDLEMQIEGLTEELVFLRKNHEEE
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Template Sequence  LREKDTLLDTLTLQLKNLKKVXHSL
Template Known Secondary structure  TTT
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   137..140.........150.........160.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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