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Job DescriptionA1L317
Confidence45.54%DateTue Jul 30 13:02:37 BST 2013
Rank172Aligned Residues231
% Identity11%Templatec3s84B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:apolipoprotein a-iv; PDBTitle: dimeric apoa-iv
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210... ......220.........230.........240....
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Query Sequence  GSGRDYSQYYSIIEDLKKQILSATCENA. RMTLQIDNARLAADDFRMKYEHELCLRECLE
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Template Sequence  DSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLR. . . . . . TQVN
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   94.....100.........110.........120.........130.........140... ....
 
   245....250.........260... ......270.........280.........290.........300...
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Query Sequence  ADINGLRKVLDEMTMTRCD. LEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNA
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Template Sequence  TQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEEL. . . . . KGRLT
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   148.150.........160.........170.........180.........190....... ..200..
 
   304.....310.........320.........330.........340.........350..... ....360..
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Query Sequence  APGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANC. ARSEVME
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Template Sequence  PYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEE
Template Known Secondary structure  GGGSTT
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   203......210.........220.........230.........240.........250.........260..
 
   363......370.... .....380.........390.........400.........410..... ....420
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Query Sequence  LKRTVQTLEIEL. QSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQ. IRAET
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Template Sequence  LRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM
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STTTT
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   263......270.........280.........290.........300.........310.........320..
 
   421......
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Query Sequence  QCQSAEY
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Template Sequence  EQLRQKL
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   323......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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