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Job DescriptionA1L317
Confidence45.22%DateTue Jul 30 13:02:37 BST 2013
Rank173Aligned Residues148
% Identity9%Templatec2p22A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:suppressor protein stp22 of temperature- PDBTitle: structure of the yeast escrt-i heterotetramer core
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   166...170.........180.........190.........200.........210.........220.....
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Query Sequence  NTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLA
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Template Sequence  NELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV
Template Known Secondary structure  TGGGGTTT
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   233......240.........250.........260.........270.........280.........290..
 
   226...230.........240.........250.........260.........270.........280.....
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Query Sequence  ADDFRMKYEHELCLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEE
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Template Sequence  LTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG
Template Known Secondary structure  TTSS


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GGGTS

SST
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   293......300.........310.........320.........330.........340.........350..
 
   286...290.........300.........310...
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Query Sequence  MKCMQGSSGGDVTVEMNAAPGVDLTKLL
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Template Sequence  TIPLDTFVKQGRELARQQFLVRWHIQRI
Template Known Secondary structure  SS
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   353......360.........370.........380
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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