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Job DescriptionA1L317
Confidence99.59%DateTue Jul 30 13:02:37 BST 2013
Rank1Aligned Residues396
% Identity7%Templatec1ciiA_
PDB info PDB header:transmembrane proteinChain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
Resolution3.00 Å
Model Dimensions (Å)X:138.278 Y:147.534 Z:102.830

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130...... ...140.........150.........160....
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Query Sequence  FGGGSSGGFSSYGGSMGCGLGGVSGYDGGL. . LSGSEKQTMQDLNDRLANYLDKVRALEE
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Template Sequence  YVNPPRVDVFHGTPPAWSSFGNKTIWGGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQK
Template Known Secondary structure  TSS













SGGGG

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   30.........40.........50.........60.........70.........80.........
 
   165....170.........180.........190.........200. ........210.........220
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Query Sequence  ANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIEDL. . . . KKQILSATCENARMTLQID
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Template Sequence  ENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTE
Template Known Secondary structure  TT

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   90.........100.........110.........120.........130.........140.........
 
   221........230.........240.........250.........260.........270.........280
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Query Sequence  NARLAADDFRMKYEHELCLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRK
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Template Sequence  IAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYER
Template Known Secondary structure  TT
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   150.........160.........170.........180.........190.........200.........
 
   281........290.........300.........310.........320.........330.........340
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Query Sequence  NHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSA
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Template Sequence  RKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARN
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   210.........220.........230.........240.........250.........260.........
 
   341........350......
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Query Sequence  SLQAQISSDAGEANCA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation   
      
      
                                            
Template Sequence  ALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNR
Template Known Secondary structure  SS
TTTS


S
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   270.........280.........290.........300.........310.........320.........
 
   357..360.........370.........380.........390.........400.........410.....
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Query Sequence  . RSEVMELKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQ
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Template Sequence  ANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITS
Template Known Secondary structure  TS
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S

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   330.........340.........350.........360.........370.........380.........
 
   416...420.........430.........440.........450.........460.........470.....
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Query Sequence  IRAETQCQSAEYECLLNIKTRLEQEIETYRRLLNGDGGGCDYRNLVSKNVVLSDSGSCAG
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Template Conservation     

      
     
       
  
  
 
 
   
  
            
    
Template Sequence  AESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKAT
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   390.........400.........410.........420.........430.........440.........
 
   476...480.........490.........500..
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Query Sequence  QGKDPSKTRVTKTIIEEVVDGRVVSSQ
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Template Conservation                          
  
Template Sequence  KDAINFTTEFLKSVSEKYGAKAEQLAR
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   450.........460.........470......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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