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Job DescriptionA1L317
Confidence97.65%DateTue Jul 30 13:02:37 BST 2013
Rank43Aligned Residues347
% Identity8%Templatec1sjjB_
PDB info PDB header:contractile proteinChain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin
Resolution20.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   143......150.........160.........170....... ..180..
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Query Sequence  QTMQDLNDRLANYLDKVRALEEANTDLECKIKDWY. . . . . . . . . . . . . . . . . . . . GKHGS
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Template Sequence  QAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKA
Template Known Secondary structure  TTTTTTTTS
TTTSS
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   374.....380.........390.........400.........410.........420.........430...
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  VKGGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLREC
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Template Conservation       
    
          
      
                        
      
Template Sequence  LLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQK
Template Known Secondary structure  TTTTT
TT
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   434.....440.........450.........460.........470.........480.........490...
 
   243......250.........260.........270.........280.... .....290....
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Query Sequence  LEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEE. . . . . . . . EMKCMQGSSG
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Template Conservation                
     
                                      
Template Sequence  RREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHE
Template Known Secondary structure  TTTTTTT




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   494.....500.........510.........520.........530.........540.........550...
 
   295....300.........310.........320.........330.........340.........350....
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Query Sequence  GDVTVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEAN
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Template Sequence  QFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVP
Template Known Secondary structure  TTTT

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   554.....560.........570.........580.........590.........600.........610...
 
   355....360.........370.........380.........390.........400.........410....
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Query Sequence  CARSEVMELKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLS
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Template Sequence  RRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLR
Template Known Secondary structure  TTTTSSTT
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   614.....620.........630.........640.........650.........660.........670...
 
   415....420.........430......... 440.........450.........460...
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Query Sequence  QIRAETQCQSAEYECLLNIKTRLEQ. . . . . . . . . . . EIETYRRLLNGDGGGCDYRNLVSK
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Template Sequence  QYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVE
Template Known Secondary structure  TTTT



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   674.....680.........690.........700.........710.........720.........730...
 
   464.....470.........480.........
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Query Sequence  NVVLSDSGSCAGQGKDPSKTRVTKTI
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Template Sequence  NQILTRDAKGISQEQMNEFRASFNHF
Template Known Secondary structure  TT

TTT
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   734.....740.........750.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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