Return to main results Retrieve Phyre Job Id

Job DescriptionA1L317
Confidence22.48%DateTue Jul 30 13:02:37 BST 2013
Rank225Aligned Residues265
% Identity11%Templatec3zx6A_
PDB info PDB header:signalingChain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i; PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.........210.........220.........230.........240....
Predicted Secondary structure 
Query SS confidence 



























































Query Sequence  GGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLE
Query Conservation                  
   
     
   
  

  
           
        

Alig confidence 



























































Template Conservation 



 

  

 
   
      
                                    
Template Sequence  DEIGILAKSIERLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETA
Template Known Secondary structure  S
Template Predicted Secondary structure 









Template SS confidence 



























































   34.....40.........50.........60.........70.........80.........90...
 
   245....250.........260.........270.........280.........290.........300....
Predicted Secondary structure 
Query SS confidence 



























































Query Sequence  ADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAA
Query Conservation   

  
   
         
      
  

  
          
               
Alig confidence 



























































Template Conservation                                                              
Template Sequence  ASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIIS
Template Known Secondary structure 
Template Predicted Secondary structure 











Template SS confidence 



























































   94.....100.........110.........120.........130.........140.........150...
 
   305....310.........320.........330. ........340.........350.........360..
Predicted Secondary structure  ..
Query SS confidence 


























. .






























Query Sequence  PGVDLTKLLNDMRAQYEAMAEQNRQEA. . ERQFNERSASLQAQISSDAGEANCARSEVME
Query Conservation      
   
                  ..                     
     
   
Alig confidence 


























..






























Template Conservation                     
                   

             
     
Template Sequence  VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVG
Template Known Secondary structure  TTSTTTS
Template Predicted Secondary structure 








Template SS confidence 



























































   154.....160.........170.........180.........190.........200.........210...
 
   363......370.........380.........390.........400.........410.........420..
Predicted Secondary structure 
Query SS confidence 



























































Query Sequence  LKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAETQC
Query Conservation             
         
   
                    

 

  
  
   
Alig confidence 



























































Template Conservation                                  
             
            
Template Sequence  KVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 



























































   214.....220.........230.........240.........250.........260.........270...
 
   423......430.........440.........
Predicted Secondary structure 
Query SS confidence 


























Query Sequence  QSAEYECLLNIKTRLEQEIETYRRLLN
Query Conservation     
   
      

 


  
  

Alig confidence 


























Template Conservation        
       
      
   
 
Template Sequence  NAALVEESAAAAAALEEQASRLTEAVA
Template Known Secondary structure  TT
Template Predicted Secondary structure 
Template SS confidence 


























   274.....280.........290.........300
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D