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Job DescriptionA1L317
Confidence88.23%DateTue Jul 30 13:02:37 BST 2013
Rank94Aligned Residues247
% Identity9%Templatec4dvzA_
PDB info PDB header:oncoproteinChain: A: PDB Molecule:cytotoxicity-associated immunodominant antigen; PDBTitle: crystal structure of the helicobacter pylori caga oncoprotein
Resolution3.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160.........170.........180....... ..190.........
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Query Sequence  KQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGS. . GRDYSQYYSIIE
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Template Conservation                             
                     
          
Template Sequence  ENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEK
Template Known Secondary structure  TT




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   562.......570.........580.........590.........600.........610.........620.
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  DLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRKVLDEMTM
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Template Conservation                                      
      
                
Template Sequence  SLRKREHLEKEVEKKLESKSGNKKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKR
Template Known Secondary structure  TTT



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   622.......630.........640.........650.........660.........670.........680.
 
   260.........270.........280.. .......290.........300.........310......
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Query Sequence  TRCDLEMQIEGLTEELVFLRKNH. . . EEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDM
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Template Conservation                                     
      
                 
Template Sequence  ELSDKLEKISKDLKDFSKSFDEFKNFSKAEETLKALKGSVKDLGINPEWISKVENLNAAL
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   687..690.........700.........710.........720.........730.........740......
 
   317..320.........330.........340.........350.........360.........370......
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Query Sequence  RAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEIELQS
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Template Conservation                   
          
        
                

   
Template Sequence  NEFKNGDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLAD
Template Known Secondary structure  T

TT
T
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   752.......760.........770.........780.........790.........800.........810.
 
   377..380........
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Query Sequence  QLALKCSLEGTL
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Template Conservation 
     
   
 
Template Sequence  LKNFSKEQLAQQ
Template Known Secondary structure 
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   815....820......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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