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Job DescriptionA1L317
Confidence96.39%DateTue Jul 30 13:02:37 BST 2013
Rank59Aligned Residues204
% Identity10%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   207..210.........220.........230.........240.........250.........260......
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Query Sequence  SATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRKVLDEMTMTRCDLEM
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Template Sequence  QNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALS
Template Known Secondary structure  TT


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   613......620.........630.........640.........650.........660.........670..
 
   267..270.....
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Query Sequence  QIEGLTEEL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FLQPGRLVEISVNGKDNYGWGAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKP
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TT

TT







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STT

S


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   673......680.........690.........700.........710.........720.........730..
 
   276...280.........290.........300.........310.........
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Query Sequence  . . . . . . . . . . . . . . . . VFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQ
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Template Sequence  FNPTLPEGIRPAEESICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRR
Template Known Secondary structure  T

SGGGSS

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SS




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   738.740.........750.........760.........770.........780.........790.......
 
   320.........330.........340.........350.........360.........370.........
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Query Sequence  YEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEIELQSQLA
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Template Sequence  FPDGIPVLDP. . . . . . VKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYS
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SS

TT......



SS
TT
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   801........810 .........820.........830.........840.........850....
 
   380.........390.........400.........410......
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Query Sequence  LKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQI
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Template Sequence  RKHDLHEDMKQLKRKISEQAVIQLDDLRRRKRVLRRL
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   855....860.........870.........880.........890.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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