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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank75Aligned Residues264
% Identity34%Templatec2y94A_
PDB info PDB header:transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk
Resolution3.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60 .........70.....
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Query Sequence  EDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLL. . . . KNKPCFQPAMKEANI
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Template Sequence  DGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQN
Template Known Secondary structure 
S

TT

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   8.10.........20.........30.........40.........50.........60.......
 
   76...80.........90.........100.........110.........120.........130.....
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Query Sequence  MKKIKHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAV
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Template Sequence  LKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGV
Template Known Secondary structure  TT


TTB


SS

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   68.70.........80.........90.........100.........110.........120.......
 
   136...140.........150.........160.........170.........180.........190.....
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Query Sequence  SYCHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLW
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Template Sequence  DYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRSCGSPNYAAPEVISGR
Template Known Secondary structure  TTT
S

SGGG
TT




SS


TT

B


S
STT

TT
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   128.130.........140.........150.........160.........170.........180.......
 
   196...200.........210.........220.........230.........240.........250.....
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Query Sequence  KSYDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDLLSL
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Template Sequence  LYA. GPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKH
Template Known Secondary structure 
B
.SSS
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TT

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   189190. ........200.........210.........220.........230.........240.......
 
   256...260.........270.........280....
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Query Sequence  LMTVNPKYRPTVTEVMKHPWLRGHCKGLT
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Template Sequence  MLQVDPMKRATIKDIREHEWFKQDLPKYL
Template Known Secondary structure  T
SSTTTS

T
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   248.250.........260.........270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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