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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank132Aligned Residues235
% Identity26%Templatec4aojA_
PDB info PDB header:transferaseChain: A: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: human trka in complex with the inhibitor az-23
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40........ .50.........60 .........70.........80.
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Query Sequence  YSQYKVVRTLGHGTYAKVLLAKHW. . LTGTPVAVKVLL. KNKPCFQPAMKEANIMKKIKH
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Template Sequence  RRDIVLKWELGEGAFGKVFLAECHNLLPKMLVAVKALKEASESARQDFQREAELLTMLQH
Template Known Secondary structure  GGG
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   507..510.........520.........530.........540.........550.........560......
 
   82.......90.........100.........110........ .120.........130.......
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Query Sequence  PNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGH. . . . IEEDEARQIFLQILSAVSY
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Template Sequence  QHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDPGPLGLGQLLAVASQVAAGMVY
Template Known Secondary structure  TTB


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   570.........580.........590.........600.........610.........620.........
 
   138.140.........150.........160.........170.........180.........190.......
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Query Sequence  CHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKS
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Template Sequence  LAGLHFVHRDLATRNCLVGQGLVVKIGDFGTM. . . . . . . . . . . . . LPIRWMPPESILYRK
Template Known Secondary structure  TT


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   641........650.........660.........670.. .......680.......
 
   198.200.........210....... ..220.........230....... ..240.........250.....
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Query Sequence  YDGTKSDLWALGVILYYMVV. GKVPFDSYIIPELQRQILAG. VYPAPCGVSNELKDLLSL
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Template Sequence  F. TTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRG
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   704 .....710.........720.........730.........740.........750.........760..
 
   256...260.........270...
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Query Sequence  LMTVNPKYRPTVTEVMKH
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Template Sequence  CWQREPQQRHSIKDVHAR
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   763......770.........780
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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