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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank237Aligned Residues232
% Identity36%Templatec3famA_
PDB info PDB header:transferaseChain: A: PDB Molecule:carbon catabolite-derepressing protein kinase; PDBTitle: crystal structure of the protein kinase domain of yeast amp-2 activated protein kinase snf1
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31..... ...40.........50.........60.........70.........80.........
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Query Sequence  VRTLGH. GTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMKKIKHPNIVSLLQ
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Template Sequence  GAHIGNYQIVKKVKLAYHTTTGQKVALKIINKKVMQ. GRIEREISYLRLLRHPHIIKLYD
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   4950.........60.........70.........80.... .....90.........100.......
 
   90.........100.........110.........120.........130.........140.........
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Query Sequence  VFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLGIVHRDLK
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Template Sequence  VIKSKDEIIMVIEYAG. NELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLK
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SS



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   121........130...... ...140.........150.........160.........170.........
 
   150.........160.........170.........180.........190.........200.........
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Query Sequence  PDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKSYDGTKSDLWALG
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Template Sequence  PENLLLDEHLNVKIADFG. . . . . . . . . . . . . . . . . . . LSPNYAAPEVIS. GPEVDVWSCG
Template Known Secondary structure  GGG
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   180.........190....... ..200......... 210.........
 
   210.........220.........230.........240.........250.........260.........
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Query Sequence  VILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDLLSLLMTVNPKYRPTVTE
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Template Sequence  VILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHE
Template Known Secondary structure  SS
SS

SST




TTS
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   240.........250.........260.........270.........280.........290.........
 
   270.........280....
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Query Sequence  VMKHPWLRGHCKGLT
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Template Sequence  IMQDDWFKVDLPEYL
Template Known Secondary structure  TT
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GGG
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   300.........310....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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