Return to main results Retrieve Phyre Job Id

Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank187Aligned Residues241
% Identity24%Templatec3v5qB_
PDB info PDB header:transferase/transferase inhibitorChain: B: PDB Molecule:nt-3 growth factor receptor; PDBTitle: discovery of a selective trk inhibitor with efficacy in rodent cancer2 tumor models
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30......... 40.........50.........60 .........70.........80...
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Query Sequence  SQYKVVRTLGHGTY. AKVLLAKHWLTGTPVAVKVLL. KNKPCFQPAMKEANIMKKIKHPN
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Template Sequence  RDIVLKRELGFKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH
Template Known Secondary structure  GG


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   536...540.........550.........560.........570.........580.........590.....
 
   84.....90.........100.........110........ .120.........130.........140..
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Query Sequence  IVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGH. IEEDEARQIFLQILSAVSYCHGLG
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Template Sequence  IVKFYGVC. . GDPLIMVFEYMKHGDLNKFLRAHGPELGLSQMLHIASQIASGMVYLASQH
Template Known Secondary structure  B

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   600....... ..610.........620.........630.........640.........650.......
 
   143......150.........160.........170.........180.........190.........200..
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Query Sequence  IVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKSYDGTK
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Template Sequence  FVHRDLATRNCLVGANLLVKIGDFGMDVY. . . STDYYRTMLPIRWMPPESIMYRKF. TTE
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SGGG
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   675....680.........690.........700... ......710.........720....... ..730
 
   203......210....... ..220.........230....... ..240.........250.........260
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Query Sequence  SDLWALGVILYYMVV. GKVPFDSYIIPELQRQILAG. VYPAPCGVSNELKDLLSLLMTVN
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Template Sequence  SDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRVCPKEVYDVMLGCWQRE
Template Known Secondary structure  TTTS

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   751........760.........770.........780.........790.........800.........810
 
   261........270..
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Query Sequence  PKYRPTVTEVMK
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Template Sequence  PQQRLNIKEIYK
Template Known Secondary structure  GGGS

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   811........820..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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