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Job DescriptionA0AUV4
Confidence98.94%DateTue Jul 30 13:10:30 BST 2013
Rank328Aligned Residues132
% Identity17%Templatec3hamA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90
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Query Sequence  VRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMKKIKHPNIVSLLQV
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Template Sequence  LRYLSSGDDSDTFLC. . . . . NEQYVVK. VPKRDSVRISQKREFELYRFLENCKLSYQIPA
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SS.....TTT.SSSTTS

SSB


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   21........30..... ....40.. .......50.........60.........70....
 
   91........100.........110.........120.........130.........140
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Query Sequence  FETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHG. . . . . . . . . .
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Template Sequence  VVYQSDRFNIMKYIKGERITYEQYH. . KLSEKEKDALAYDEATFLKELHSIEIDCSVSLF
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B


T..TS
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   75....80.........90......... 100.........110.........120.........130..
 
   141......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGIVHRD
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Template Sequence  SDALVNKKDKFLQDKKLLISILEKEQLLTDEMLEHIETIYENILNNAVLFKYTPCLVHND
Template Known Secondary structure  TTB

TT


T
GGGG




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   133......140.........150.........160.........170.........180.........190..
 
   148.150.........160.........170
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Query Sequence  LKPDNIMIDDKGSIKIIDFGLST
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Template Sequence  FSANNMIFRNNRLFGVIDFGDFN
Template Known Secondary structure 
SGGGTT


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   193......200.........210.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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