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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank98Aligned Residues253
% Identity32%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70......... 80...
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Query Sequence  YSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMKKI. KHPN
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Template Sequence  LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNHPF
Template Known Secondary structure  GGG
SSTTTTGGGT


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   241........250.........260.........270.........280.........290.........300
 
   84.....90.........100.........110.........120.........130.........140...
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Query Sequence  IVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLGI
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Template Sequence  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGI
Template Known Secondary structure  B


SS

TT
BSS

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   305....310.........320.........330.........340.........350.........360....
 
   144.....150.........160.........170. ........180.........190.........200..
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Query Sequence  VHRDLKPDNIMIDDKGSIKIIDFGLSTQ. VKPGDLLDEHCGAYAFGAPELFLWKSYDGTK
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Template Sequence  IYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDY. GFS
Template Known Secondary structure  B




GGG
TTS



TT
B



TT

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S
GGG

TT

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T
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   365....370.........380.........390.........400.........410.........420 ...
 
   203......210.........220..... ....230.........240.........250.........
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Query Sequence  SDLWALGVILYYMVVGKVPFDSY. . . IIPELQRQILAGVYPAPCGVSNELKDLLSLLMTV
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Template Sequence  VDWWALGVLMFEMMAGRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNK
Template Known Secondary structure  SS
SSTTTT








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   424.....430.........440.........450.........460.........470.........480...
 
   260..... ....270........
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Query Sequence  NPKYRP. . . . . . TVTEVMKHPWLRG
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Template Sequence  DPKERLGCHPQTGFADIQGHPFFRN
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TTTSTT
STTTSTTTTT
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   490.........500.........510....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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