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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank81Aligned Residues250
% Identity27%Templatec2a1aB_
PDB info PDB header:protein synthesis/transferaseChain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.......
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Query Sequence  NPEDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMK
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Template Sequence  HTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN. . . EKAEREVKALA
Template Known Secondary structure  T



SSSSS



S...GGGGT
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   257..260.........270.........280.........290.........300.. .......310...
 
   78.80.........90... ......100.........110...... ...120...
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Query Sequence  KIKHPNIVSLLQVFET. . . . . . . . . . . . KTRGYLIMELVEGQELYEYIKSS. . GHIEEDE
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Template Sequence  KLDHVNIVHYNGCWDGFDYDPETSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVL
Template Known Secondary structure  T


TTB


TT






TT
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   314.....320.........330.........340.........350.........360.........370...
 
   124.....130.........140.........150.........160.........170.........180...
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Query Sequence  ARQIFLQILSAVSYCHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCG
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Template Sequence  ALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLK. NDGKRRSKG
Template Known Secondary structure  TTTT
SGGGTT


TTSS.

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   391........400.........410.........420.........430.........440 .........
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  AYAFGAPELFLWKSYDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPC
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Template Sequence  TLRYMSPEQISSQDY. GKEVDLYALGLILAELLHVCDTA. . FETSKFFTDLR. . DGIISD
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   451........460..... ....470.........480........ .490......... 500.....
 
   244.....250.........260.........270......
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Query Sequence  GVSNELKDLLSLLMTVNPKYRPTVTEVMKHPWL
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Template Sequence  IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTV
Template Known Secondary structure  TS
T
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   506...510.........520.........530........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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