Return to main results Retrieve Phyre Job Id

Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank259Aligned Residues240
% Identity23%Templatec3rgfA_
PDB info PDB header:transferase,transcriptionChain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40........ .50.........60.........70.........80...
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Query Sequence  SQYKVVRTLGHGTYAKVLLAKHW. . LTGTPVAVKVLLKNKPCFQPAMKEANIMKKIKHPN
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Template Sequence  ERVEDLFEYEGCKVGHVYKAKRKDGKDDKDYALKQIEGTGISM. SACREIALLRELKHPN
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   14.....20.........30.........40.........50...... ...60.........70..
 
   84.....90 .........100.........110........ .120.........130.........140
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Query Sequence  IVSLLQV. . FETKTRGYLIMELVEGQELYEYIKSSGH. IEEDEARQIFLQILSAVSYCHG
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Template Sequence  VISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKLPRGMVKSLLYQILDGIHYLHA
Template Known Secondary structure  B



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   78.80.........90.........100.........110.........120.........130.......
 
   141........150......... 160.........170.........180.........190......
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Query Sequence  LGIVHRDLKPDNIMIDDKG. . . . SIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWK
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Template Sequence  NWVLHRDLKPANILVMGEGPERGRVKIADMGFA. . . . . . . . . . . . RVTFWYRAPELLLGA
Template Known Secondary structure  TT






GGG

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   145....150.........160.........170....... ..180.........190..
 
   197..200.........210.........220...... ...230........
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Query Sequence  SYDGTKSDLWALGVILYYMVVGKVPFDSYI. . . . . . . IPELQRQILAGV. . . . . . . . . . .
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Template Sequence  RHYTKAIDIWAIGCIFAELLTSEPIFHCRQNPYHHDQLDRIFNVMGFPADKDWEDIKKMP
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   209210.........220.........230.........240.........250.........260........
 
   239240.........250.........260.........270.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . YPAPCGVSNELKDLLSLLMTVNPKYRPTVTEVMKHPW
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Template Sequence  EHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPY
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GGGGTT

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   275....280.........290.........300.........310.........320.........330....
 
   276..
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Query Sequence  LRG
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Template Sequence  FLE
Template Known Secondary structure  GTS
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   335..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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