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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank56Aligned Residues253
% Identity28%Templatec2vd5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:dmpk protein; PDBTitle: structure of human myotonic dystrophy protein kinase in2 complex with the bisindoylmaleide inhibitor bim viii
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60........ .70.........80
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Query Sequence  YSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQP. . . . AMKEANIMKKIK
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Template Sequence  RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGD
Template Known Secondary structure  GGG
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   68.70.........80.........90.........100.........110.........120.......
 
   81........90.........100.........110........ .120.........130.........
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Query Sequence  HPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGH. IEEDEARQIFLQILSAVSYCH
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Template Sequence  RRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH
Template Known Secondary structure  TTTB


SS



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BSS


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   128.130.........140.........150.........160.........170.........180.......
 
   140.........150.........160.........170......... 180.........190....
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Query Sequence  GLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLD. . EHCGAYAFGAPELFL. . .
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Template Sequence  RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVG
Template Known Secondary structure  TT



SGGG
TTS



TT


TTS

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GGG

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   188.190.........200.........210.........220.........230.........240.......
 
   195....200.........210.........220.........230.........240.. .......250
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Query Sequence  . . . WKSYDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAP. CGVSNELK
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Template Sequence  GGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPGVPEEAR
Template Known Secondary structure  T
TT
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TSS
TT

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   248.250.........260.........270.........280.........290.........300.......
 
   251........260..... ....270........
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Query Sequence  DLLSLLMTVNPKYRP. . . TVTEVMKHPWLRG
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Template Sequence  DFIQRLLC. PPETRLGRGGAGDFRTHPFFFG
Template Known Secondary structure  TTSS.
GGG
TTTTTTSGGGTT
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   312....... 320.........330.........340.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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