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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank66Aligned Residues250
% Identity39%Templatec2h6dA_
PDB info PDB header:signaling protein,transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain)
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60..... ....70.......
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Query Sequence  GELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPC. . . . FQPAMKEANIMK
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Template Sequence  RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLK
Template Known Secondary structure 

TT
SSTTT

TT
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   10.........20.........30.........40.........50.........60.........
 
   78.80.........90.........100.........110.........120.........130.......
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Query Sequence  KIKHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSY
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Template Sequence  LFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDY
Template Known Secondary structure  T


TTB


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   70.........80.........90.........100.........110.........120.........
 
   138.140.........150.........160.........170.........180.........190.......
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Query Sequence  CHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKS
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Template Sequence  CHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS. . . . . . . . . . . . . DAAPEVISGRL
Template Known Secondary structure 
SS




GGG
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GGG


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   130.........140.........150.........160..... ....170......
 
   198.200.........210.........220.........230.........240.........250.......
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Query Sequence  YDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDLLSLLM
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Template Sequence  YAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHML
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T
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   190.........200.........210.........220.........230.........240.........
 
   258.260.........270.........280....
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Query Sequence  TVNPKYRPTVTEVMKHPWLRGHCKGLT
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Template Sequence  QVDPLKRATIKDIREHEWFKQDLPSYL
Template Known Secondary structure 
SSGGGS

STT

GGG
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   250.........260.........270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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