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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank164Aligned Residues231
% Identity24%Templatec4g3dE_
PDB info PDB header:transferaseChain: E: PDB Molecule:nf-kappa-beta-inducing kinase; PDBTitle: crystal structure of human nf-kappab inducing kinase (nik)
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.........70...
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Query Sequence  PQPSNPEDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEA
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Template Sequence  LTEKLKPVDYEYREEVHWATHGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRAE. . . . EL
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   382.......390.........400.........410.........420.........430..... ..
 
   74.....80.........90.........100.........110.........120.........130...
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Query Sequence  NIMKKIKHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILS
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Template Sequence  MACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALE
Template Known Secondary structure  TTTT


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   442.......450.........460.........470.........480.........490.........500.
 
   134.....140.........150........ .160.........170.........180.........190..
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Query Sequence  AVSYCHGLGIVHRDLKPDNIMIDDK. GSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPEL
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Template Sequence  GLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQ. . . . . . . . . PGTTHMAPEV
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GGG
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   502.......510.........520.........530.........540.. .......550..
 
   193......200.........210.........220.........230.........240.........250..
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Query Sequence  FLWKSYDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDL
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Template Sequence  VLGRSC. DAKVDVWSSCCMMLHMLNGCHPP. . . . . . . . . . . . . . PVREIPPSCAPLTAQA
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   568.570... ......580.........590...... ...600.........610..
 
   253......260.........270..
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Query Sequence  LSLLMTVNPKYRPTVTEVMK
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Template Sequence  IQEGLRKEPIHRVSAAELGG
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SSTTTS

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   630.........640.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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