Return to main results Retrieve Phyre Job Id

Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank193Aligned Residues268
% Identity18%Templatec2kulA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: solution structure of human vaccinia related kinase 1(vrk1)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.. ....
Predicted Secondary structure 

































.....
Query SS confidence 


















































. . . . .



Query Sequence  PAHIEEELPPPSPQPSNPEDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGT. . . . . PVAV
Query Conservation 
             
           
 
   

 
 

 

 
    

 ..... 


Alig confidence 













.



































.....



Template Conservation                .
          
 
   

 
 

 

 
             


Template Sequence  QSSAKRHLAEQFAV. GEIITDMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVV
Template Known Secondary structure 









SSST.T

TTS



SSSSS




SS


SSSS
Template Predicted Secondary structure 













.




















Template SS confidence 



























































   12.......20..... ....30.........40.........50.........60.........70
 
   57..60.... .....70.........80.........90.. .......100
Predicted Secondary structure 


............







....

Query SS confidence 







. . . . . . . . . . . .



























. . . .







Query Sequence  KVLLKNKP. . . . . . . . . . . . CFQPAMKEANIMKKIKHPNIVSLLQVFE. . . . TKTRGYLI
Query Conservation 
 
     ............       
  

  
 




 
     ....     


Alig confidence 







............



























....







Template Conservation 

          
              
        
  

                 

Template Sequence  KVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMI
Template Known Secondary structure  TT
SS

TT










TT
Template Predicted Secondary structure 

















Template SS confidence 



























































   71........80.........90.........100.........110.........120.........130
 
   101........110...... ...120.........130.........140.........150.........
Predicted Secondary structure 






.























Query SS confidence 















.










































Query Sequence  MELVEGQELYEYIKSS. GHIEEDEARQIFLQILSAVSYCHGLGIVHRDLKPDNIMIDDKG
Query Conservation 


  

 
   
   .  
       
  

  

 


   







 



    
Alig confidence 



.










.










































Template Conservation   
  .   
   
       
      
  

   
  

   







 



    
Template Sequence  MDRF. GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN
Template Known Secondary structure 
.TTT


TTTB

S


GGGTT
Template Predicted Secondary structure 

.























Template SS confidence 



























































   131... .....140.........150.........160.........170.........180.........
 
   160.. .......170.........180.. .......190.........200.........
Predicted Secondary structure 
..











........










Query SS confidence 


. .



















. . . . . . . .


























Query Sequence  SIK. . IIDFGLSTQVKPGDLLDEHC. . . . . . . . GAYAFGAPELFLWKSYDGTKSDLWALG
Query Conservation   

..
 




             ........

  
 


 
        
 





Alig confidence 


..



















........















.









Template Conservation       
 


 
                     

  
 


       .
   

 


Template Sequence  PDQVYLVDYGLAYRYCPEGVHKEYKEDPKRCHDGTIEFTSIDAHNGVAP. SRRGDLEILG
Template Known Secondary structure 

GGG

BSSSTT



S


SS


SS
TTTST


.
Template Predicted Secondary structure 






























.

Template SS confidence 



























































   190.........200.........210.........220.........230........ .240........
 
   210.........220.........230...... ...240.........250........
Predicted Secondary structure 









...........











Query SS confidence 


























. . . . . . . . . . .





















Query Sequence  VILYYMVVGKVPFDSYIIPELQRQILA. . . . . . . . . . . GVYPAPCGVSNELKDLLSLLMT
Query Conservation 


 




  

           
  ...........     
   
     

   
 
Alig confidence 


























...........





















Template Conservation    
  

 
  
                                      
   
     
Template Sequence  YCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKL
Template Known Secondary structure  SS
TTTTTTT
TTTS
SS


Template Predicted Secondary structure 





















Template SS confidence 



























































   249250.........260.........270.........280.........290.........300........
 
   259260.........270..
Predicted Secondary structure 





Query SS confidence 













Query Sequence  VNPKYRPTVTEVMK
Query Conservation   

  
 
  


 
Alig confidence 













Template Conservation       

    
  
Template Sequence  LDYTEKPLYENLRD
Template Known Secondary structure  TTTTSS

Template Predicted Secondary structure 




Template SS confidence 













   309310.........320..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D