Return to main results Retrieve Phyre Job Id

Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank287Aligned Residues243
% Identity27%Templatec2xs0A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:mitogen-activated protein kinase 8; PDBTitle: linear binding motifs for jnk and for calcineurin antagonistically2 control the nuclear shuttling of nfat4
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60 .........70....
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Query Sequence  NPEDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLL. . . KNKPCFQPAMKEAN
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Template Sequence  GDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELV
Template Known Secondary structure  TTTTTTTTTT
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   16...20.........30.........40.........50.........60.........70.....
 
   75....80.........90... ......100.........110.........120........
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Query Sequence  IMKKIKHPNIVSLLQVFET. . . . . . KTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIF
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Template Sequence  LMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLC. . . QVIQMELDHERMSYLL
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   76...80.........90.........100.........110...... ...120.........130..
 
   129130.........140.........150.........160.........170.........180........
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Query Sequence  LQILSAVSYCHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFG
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Template Sequence  YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA. . . . . . . . . . . . . . TRYYR
Template Known Secondary structure  TTT


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   133......140.........150.........160.........170... .....
 
   189190.........200.........210.........220.........230.........240...
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Query Sequence  APELFLWKSYDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPC. . . . .
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Template Sequence  APEVILGMGYKE. NVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK
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   193......200.... .....210.........220.........230.........240.........250.
 
   244.....250.........260......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GVSNELKDLLSLLMTVNPKYRPT
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Template Sequence  LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS
Template Known Secondary structure  S
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   252.......260.........270.........280.........290.........300.........310.
 
   267..270........
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Query Sequence  VTEVMKHPWLRG
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Template Sequence  VDEALQHPYINV
Template Known Secondary structure  ST
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   312.......320...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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