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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank258Aligned Residues243
% Identity28%Templatec4aaaA_
PDB info PDB header:transferaseChain: A: PDB Molecule:cyclin-dependent kinase-like 2; PDBTitle: crystal structure of the human cdkl2 kinase domain
Resolution1.53 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60 .........70.........80.
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Query Sequence  YSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLL. . . KNKPCFQPAMKEANIMKKIKH
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Template Sequence  MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRH
Template Known Secondary structure  GGGGGGGTTSSTTT

S
SS



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   1........10.........20.........30.........40.........50.........60
 
   82.......90.........100.........110.........120.........130.........140.
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Query Sequence  PNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGL
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Template Sequence  ENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH
Template Known Secondary structure  TTB

TT

SSTT


T
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   61........70.........80.........90.........100.........110.........120
 
   142.......150.........160.........170.........180.........190.........200.
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Query Sequence  GIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKSYDGT
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Template Sequence  NIIHRDIKPENILVSQSGVVKLCDFGFA. . . . . . . . . . . EVATRWYRAPELLVGDVKYGK
Template Known Secondary structure  T






GGG
TTS



TT
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TT

TT
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T
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   121........130.........140........ .150.........160.........
 
   202.......210.........220.........230.........240...
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Query Sequence  KSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPC. . . . . . . . . . . . . . . . . .
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Template Conservation       
 
    
   
   
                                       
Template Sequence  AVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLP
Template Known Secondary structure  SS
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GGGTT



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   182.......190.........200.........210.........220.........230.........240.
 
   244.....250.........260.........270........
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Query Sequence  . . . . . . . . . . . . . GVSNELKDLLSLLMTVNPKYRPTVTEVMKHPWLRG
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Template Sequence  EIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQM
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SS


STTS
T
SSGGGS

GGGGGGSG
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   242.......250.........260.........270.........280.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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