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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank194Aligned Residues256
% Identity26%Templatec3mi9A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60 .........70.........80.
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Query Sequence  YSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLL. . . KNKPCFQPAMKEANIMKKIKH
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Template Sequence  VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH
Template Known Secondary structure  GGG
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   16...20.........30.........40.........50.........60.........70.....
 
   82.......90.........100.........110.........120.........130.........140.
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Query Sequence  PNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGL
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Template Sequence  ENVVNLIEICRTKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN
Template Known Secondary structure  TTB





S
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   76...80.........90.........100.........110.........120.........130.....
 
   142.......150.........160.........170.. .......180.........190.......
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Query Sequence  GIVHRDLKPDNIMIDDKGSIKIIDFGLSTQV. . . . KPGDLLDEHCGAYAFGAPELFLWKS
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Template Conservation             
             
                           
      
Template Sequence  KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYNRVVTLWYRPPELLLGER
Template Known Secondary structure  T



SGGG
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   144.....150.........160.........170.........180.........190.........200...
 
   198.200.........210.........220.........230.........240.....
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Query Sequence  YDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGV. . . . . . . . . . . .
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Template Sequence  DYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEK
Template Known Secondary structure  S

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TTTSTTGGG
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   205....210.........220.........230.........240.........250.........260....
 
   246...250.........260.........270.........280
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Query Sequence  . . . . . . . . . . . . . . . . . . . . SNELKDLLSLLMTVNPKYRPTVTEVMKHPWLRGHC
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Template Sequence  LELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP
Template Known Secondary structure  S


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   265....270.........280.........290.........300.........310.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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