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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank293Aligned Residues241
% Identity39%Templatec3kn5B_
PDB info PDB header:transferaseChain: B: PDB Molecule:ribosomal protein s6 kinase alpha-5; PDBTitle: crystal structure of the c-terminal kinase domain of msk1 in complex2 with amp-pnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30. ........40.........50.........60.........70.......
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Query Sequence  DGELYSQYKVV. . . RTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMK
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Template Sequence  DSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISK. . RMEANTQKEITALK
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   416...420.........430.........440.........450......... 460.........470...
 
   78. 80.........90.........100.........110.........120.........130......
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Query Sequence  KI. KHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVS
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Template Sequence  LCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVS
Template Known Secondary structure  TTT
TTB


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BT
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B
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   474.....480.........490.........500.........510.........520.........530...
 
   137..140.........150.........160.........170.........180.........190......
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Query Sequence  YCHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWK
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Template Sequence  HMHDVGVVHRDLKPENLLF. TDLEIKIIDFGFARLKP. . . . . . . . . . . . . . . . . . . . . . P
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TT


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   534.....540.........550.. .......560......... 570
 
   197..200.........210.........220...... ...230.........240... ..
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Query Sequence  SYDGTKSDLWALGVILYYMVVGKVPFDSYI. . . . . . . IPELQRQILAGVYPAPC. . . . GV
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Template Sequence  NGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNV
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TS

TT

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   597..600.........610.........620.........630.........640.........650......
 
   246...250.........260.........270.........280......
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Query Sequence  SNELKDLLSLLMTVNPKYRPTVTEVMKHPWLRGHCKGLTNI
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Template Sequence  SQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNP
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TT
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B
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   657..660.........670.........680.........690.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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