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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank219Aligned Residues249
% Identity36%Templatec2jc6C_
PDB info PDB header:transferaseChain: C: PDB Molecule:calcium/calmodulin-dependent protein kinase type 1d; PDBTitle: crystal structure of human calmodulin-dependent protein2 kinase 1d
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.......
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Query Sequence  NPEDGELYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMK
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Template Sequence  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKK. . . . ASIENEIAVLR
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   13......20.........30.........40.........50....... ..60........
 
   78.80.........90.........100.........110.........120.........130.......
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Query Sequence  KIKHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSY
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Template Sequence  KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY
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   75....80.........90.........100.........110.........120.........130....
 
   138.140.........150.........160.........170.........180.........190.......
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Query Sequence  CHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKS
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Template Sequence  LHRMGIVHRDLKPENLLYYSQDEESKIM. . . . . . . . . . . . . . . . . ISPGYVAPEVLAQKP
Template Known Secondary structure  TT






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   135....140.........150.........160.. .......170.......
 
   198.200.........210.........220.........230.........240.. .......250...
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Query Sequence  YDGTKSDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAP. . . . CGVSNELKDLL
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Template Sequence  Y. SKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFI
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   198 .200.........210.........220.........230.........240.........250......
 
   254.....260.........270.........280........
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Query Sequence  SLLMTVNPKYRPTVTEVMKHPWLRGHCKGLTNIHE
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Template Sequence  RNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHE
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   257..260.........270.........280.........290.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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