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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank248Aligned Residues252
% Identity17%Templatec3op5B_
PDB info PDB header:transferaseChain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30...... ...40........ .50.........60.....
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Query Sequence  PEDGELYSQYKVVRTLGH. . GTYAKVLLAKHW. . . . . LTGTPVAVKVLLKNKPC. . . . . .
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Template Sequence  AVGEIITDMAAAAWKVGLPIGQFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELK
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   24.....30.........40.........50.........60.........70.........80...
 
   66...70.........80.........90.. .......100.........110.....
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Query Sequence  . . . . . . FQPAMKEANIMKKIKHPNIVSLLQVFE. . . . TKTRGYLIMELVEGQELYEYIKS
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Template Sequence  FYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF. GSDLQKIYEA
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   86...90.........100.........110.........120.........130.... .....140....
 
   116. ..120.........130.........140.........150....... ..160.........170..
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Query Sequence  SG. HIEEDEARQIFLQILSAVSYCHGLGIVHRDLKPDNIMIDD. . KGSIKIIDFGLSTQV
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Template Sequence  NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRY
Template Known Secondary structure  TTS


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   145....150.........160.........170.........180.........190.........200....
 
   173. .....180.........190.........200.........210.........220....
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Query Sequence  KP. . . . . . . . GDLLDEHCGAYAFGAPELFLWKSYDGTKSDLWALGVILYYMVVGKVPFDS
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Template Sequence  CPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAP. SRRGDLEILGYCMIQWLTGHLPWED
Template Known Secondary structure  SGGG



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   205....210.........220.........230........ .240.........250.........260...
 
   225....230.........240 .........250.........260.........270..
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Query Sequence  YIIPELQRQILAGVYP. . . . . . . . . . . APCGVSNELKDLLSLLMTVNPKYRPTVTEVMK
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Template Sequence  NLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD
Template Known Secondary structure  GTT

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   264.....270.........280.........290.........300.........310.........320..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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