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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank267Aligned Residues241
% Identity27%Templatec4bgqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:cyclin-dependent kinase-like 5; PDBTitle: crystal structure of the human cdkl5 kinase domain
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80...
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Query Sequence  LYSQYKVVRTLGHGTYAKVLLAKHWLTGTPVAVKVLLKNKPCFQPAMKEANIMKKIKHPN
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Template Sequence  VMNKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKVK. . . . ETTLRELKMLRTLKQEN
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   910.........20.........30.........40....... ..50.........60....
 
   84.....90.........100.........110.........120.........130.........140...
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Query Sequence  IVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLGI
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Template Sequence  IVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVKSYIYQLIKAIHWCHKNDI
Template Known Secondary structure  B

TT

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TT
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   72.......80.........90.........100.........110.........120.........130.
 
   144.....150.........160.........170.........180.........190.........200...
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Query Sequence  VHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKSYDGTKS
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Template Conservation                                .........                .    
Template Sequence  VHRDIKPENLLISHNDVLKLCDFGFARNLS. . . . . . . . . ETRWYRSPELLLGAPY. GKSV
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GGG
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TT
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   132.......140.........150.........160. ........170....... ..180.
 
   204.....210.........220.........230.........240.
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Query Sequence  DLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPA. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHGLRFPAV
Template Known Secondary structure  S

S


SS
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   193......200.........210.........220.........230.........240.........250..
 
   242.......250.........260.........270........
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Query Sequence  . . . . . . . . . . PCGVSNELKDLLSLLMTVNPKYRPTVTEVMKHPWLRG
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Template Sequence  NHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQT
Template Known Secondary structure  SS


TTTS
S
SSGGGS

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   253......260.........270.........280.........290.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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