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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank225Aligned Residues278
% Identity27%Templatec1vzoA_
PDB info PDB header:transferaseChain: A: PDB Molecule:ribosomal protein s6 kinase alpha 5; PDBTitle: the structure of the n-terminal kinase domain of msk12 reveals a novel autoinhibitory conformation for a dual3 kinase protein
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40....... ..50.........60 ........
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Query Sequence  SNPEDGELYSQYKVVRTLGHGTYAKVLLAKH. . . WLTGTPVAVKVLL. . . . . KNKPCFQP
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Template Sequence  TGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEH
Template Known Secondary structure  SS





GGGTTT
SSTTTT
SSSGGG
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   38.40.........50.........60.........70.........80.........90.......
 
   6970......... 80.........90.........100.........110.........120.......
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Query Sequence  AMKEANIMKKI. KHPNIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQI
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Template Sequence  TRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIY
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TTB

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   98.100.........110.........120.........130.........140.........150.......
 
   128.130.........140.........150.........160.........170... ......180......
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Query Sequence  FLQILSAVSYCHGLGIVHRDLKPDNIMIDDKGSIKIIDFGLSTQVK. PGDLLDEHCGAYA
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Template Sequence  VGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTI
Template Known Secondary structure  TT






GGG
TTS
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GGGGGGG
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   158.160.........170.........180.........190.........200.........210.......
 
   187..190.........200.........210.........220....... ..230.........240..
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Query Sequence  FGAPELFLWKSYDGTKSDLWALGVILYYMVVGKVPFDSYII. . . . PELQRQILAGVYPAP
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Template Sequence  EYMAPDIVRGGD. DKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP
Template Known Secondary structure  TT

TT

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   218.220......... 230.........240.........250.........260.........270......
 
   243......250.........260..... ....270.........280.........290.....
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Query Sequence  CGVSNELKDLLSLLMTVNPKYRP. . . . . TVTEVMKHPWLRGHCKGLTNIHEEPVPVRP
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Template Sequence  QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKP
Template Known Secondary structure  TTS
T
SSGGGSTTSSTTTTSGGGTT

TT
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   280.........290.........300.........310.........320.........330.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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