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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank51Aligned Residues243
% Identity26%Templatec4fl2A_
PDB info PDB header:transferaseChain: A: PDB Molecule:tyrosine-protein kinase syk; PDBTitle: structural and biophysical characterization of the syk activation2 switch
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50... ......60 .........70.........80......
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Query Sequence  RTLGHGTYAKVLLAKHWLTGTP. . VAVKVLL. . . KNKPCFQPAMKEANIMKKIKHPNIVS
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Template Sequence  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR
Template Known Secondary structure  TTTT
SGGG
GGG


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   375....380.........390.........400.........410.........420.........430....
 
   87..90.........100.........110.........120.........130.........140......
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Query Sequence  LLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLGIVHR
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Template Sequence  MIGICEAES. WMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHR
Template Known Secondary structure  SSS.

TT
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   435....440... ......450.........460.........470.........480.........490...
 
   147..150.........160.........170.........180.. .......190.........200..
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Query Sequence  DLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHC. . . . GAYAFGAPELFLWKSYDGTK
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Template Sequence  DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF. SSK
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SGGGTT

TTTT

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   494.....500.........510.........520.........530.........540......... 550..
 
   203......210....... ..220.........230....... ..240.........250.........260
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Query Sequence  SDLWALGVILYYMVV. GKVPFDSYIIPELQRQILAG. VYPAPCGVSNELKDLLSLLMTVN
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Template Sequence  SDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYD
Template Known Secondary structure  TTT

SSTT

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   553......560.........570.........580.........590.........600.........610..
 
   261........270 ......
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Query Sequence  PKYRPTVTEV. . . MKHPWL
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Template Sequence  VENRPGFAAVELRLRNYYY
Template Known Secondary structure  TTTS

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   613......620.........630.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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