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Job DescriptionA0AUV4
Confidence100.00%DateTue Jul 30 13:10:30 BST 2013
Rank171Aligned Residues242
% Identity37%Templatec3a60B_
PDB info PDB header:transferaseChain: B: PDB Molecule:ribosomal protein s6 kinase beta-1; PDBTitle: crystal structure of unphosphorylated p70s6k1 (form i)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40...... ...50.........60.........70.........80..
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Query Sequence  SQYKVVRTLGHGTYAKVLLAK. . . HWLTGTPVAVKVLLKNKPCFQPAMKEANIMKKIKHP
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Template Sequence  ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKK. . . . . . . . . . . . . . . . . . KHP
Template Known Secondary structure  GG

SSS

SSTTTT

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   8990.........100.........110.........120....... ..130
 
   83......90.........100.........110.........120.........130.........140..
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Query Sequence  NIVSLLQVFETKTRGYLIMELVEGQELYEYIKSSGHIEEDEARQIFLQILSAVSYCHGLG
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Template Sequence  FIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKG
Template Known Secondary structure  TB


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TTTTST


TT
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   154.....160.........170.........180.........190.........200.........210...
 
   143......150.........160.........170.........180.........190.........200..
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Query Sequence  IVHRDLKPDNIMIDDKGSIKIIDFGLSTQVKPGDLLDEHCGAYAFGAPELFLWKSYDGTK
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Template Sequence  IIYRDLKPENIMLNHQGHVKLTDFGLC. . . . . . . . . KESCGTIEYMAPEILMRSGH. NRA
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S


GGG

TT

B


TT
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TTS
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   214.....220.........230.........240 .........250.........260 ...
 
   203......210.........220.........230.........240.........250.........260..
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Query Sequence  SDLWALGVILYYMVVGKVPFDSYIIPELQRQILAGVYPAPCGVSNELKDLLSLLMTVNPK
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Template Sequence  VDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAA
Template Known Secondary structure  SS
TT

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S
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   274.....280.........290.........300.........310.........320.........330...
 
   263... ...270.........280.........290.....
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Query Sequence  YRPT. . . . . VTEVMKHPWLRGHCKGLTNIHEEPVPVRP
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Template Sequence  SRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKP
Template Known Secondary structure  TSTT
STTTTSGGGTT

TT
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   334.....340.........350.........360.........370.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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