Job Description Q8BGA5 Confidence 97.51% Date Tue Jul 30 13:13:37 BST 2013 Rank 12 Aligned Residues 69 % Identity 32% Template c4jvhA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:protein quaking; PDBTitle: structure of the star domain of quaking protein in complex with rna Resolution 3.50 Å Model Dimensions (Å) X:38.424 Y:27.287 Z:28.579

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																										.	.	190	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	R	L	I	G	P	K	G	S	T	L	K	A	L	E	L	L	T	N	C	Y	V	M	V	Q	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	S	A	I	G	P
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	R	I	L	G	P	R	G	L	T	A	K	Q	L	E	A	E	T	G	C	K	I	X	V	R	G	K	G	S	X	R	D	K	K	K	E	E	Q	N	R	G	K	P	N	W	E	H	L	N	E	D	L	H	V	L	I	T	V	E
Template Known Secondary structure								G	G	G																		S	T	T		S	S									T	T	S	T	T		G	G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
								195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	F	S	G	L	K	E	V	R	K	V	V	L	D	T	M	K	N	I	H	P	I	Y	N	I	K	T	L	M	I	K	R	E	L	A
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	Q	N	R	A	E	I	K	L	K	R	A	V	E	E	V	K	K	L	L	V	P	A	A	E	G	E	D	S	L	K	K	X	Q	L	X	E	L	A
Template Known Secondary structure																						T	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D