Phyre 2 alignment of A2A5E6 with c2xzlA_

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Job Description | A2A5E6
Confidence | 27.57% | Date | Wed Jul 10 14:22:42 BST 2013
Rank | 238 | Aligned Residues | 36
% Identity | 25% | Template | c2xzlA_
PDB info | PDB header:hydrolase/rna | Chain: A: PDB Molecule:atp-dependent helicase nam7; | PDBTitle: upf1-rna complex
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 76 | . | . | . | 80 | . | . | . | . | . | . |  |  |  |  |  |  | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 110 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query Sequence |  | F | I | S | C | N | I | C | H | L | R | F | . | . | . | . | . | . | N | S | A | N | Q | A | E | A | H | Y | K | G | H | R | H | A | R | K | . | . | . | . | . | . | . | . | . | . | . | . | L | K | A | V | E | A | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | I | K | C | N | S | C | K | K | W | F | C | N | T | K | N | G | T | S | S | S | H | I | V | N | H | L | V | L | S | H | H | N | V | V | S | L | H | P | D | S | D | L | G | D | T | V | L | E | C | Y | N | C | G
Template Known Secondary structure |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  | S | S | S | S | S |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  | T | T | S | S | S |  | S |  | B |  |  |  | S | S | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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