Phyre 2 alignment of A2A5E6 with c3k1qC_

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Job Description | A2A5E6
Confidence | 92.49% | Date | Wed Jul 10 14:22:42 BST 2013
Rank | 157 | Aligned Residues | 47
% Identity | 23% | Template | c3k1qC_
PDB info | PDB header:virus | Chain: C: PDB Molecule:vp3b, the building block protein of inner shell; | PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics
Resolution | 4.50 Å
Model Dimensions (Å) | X:33.900 Y:47.800 Z:33.100

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |  | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |  | . | 100 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Query Sequence |  | K | A | V | I | S | H | T | F | G | V | P | S | P | L | K | K | K | L | F | . | I | S | C | N | I | C | H | L | R | F | N | S | A | N | Q | A | E | A | H | Y | K | G | . | H | R | H | A | R | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | A | V | V | S | D | P | Q | S | M | K | V | T | P | I | V | N | P | S | S | Y | V | C | N | V | C | N | A | R | F | S | T | M | S | A | L | S | E | H | L | R | S | D | H | R | D | D | A | S
Template Known Secondary structure |  |  | T | T |  |  |  | S |  |  |  |  |  |  | S |  | S | S | S |  | T | T | T | T |  | S | S | S | S |  |  |  | S |  |  |  |  |  |  |  |  |  |  | T | S | S | T | T |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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