Phyre 2 alignment of A2A5E6 with c1wjvA_

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Job Description | A2A5E6
Confidence | 76.96% | Date | Wed Jul 10 14:22:42 BST 2013
Rank | 195 | Aligned Residues | 69
% Identity | 16% | Template | c1wjvA_
PDB info | PDB header:dna binding protein | Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; | PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | I | S | C | N | I | C | H | L | R | F | N | S | A | N | Q | A | E | A | H | Y | K | G | H | R | H | A | R | K | L | K | A | V | E | A | A | K | S | K | Q | R | P | R | N | P | T | T | N | G | T | V | V | S | S | A | S | P | P | A | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | F | T | C | N | A | C | G | E | S | . | V | K | K | I | Q | V | E | K | H | V | S | N | C | R | N | C | E | C | L | S | C | I | D | C | G | K | D | F | W | G | D | D | Y | K | S | H | V | K | C | I | S | E | G | Q | K | Y | G | G | K
Template Known Secondary structure |  |  |  |  |  | S | S | S |  |  |  | . |  |  | T | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | T | T |  |  |  |  | G | G | G | T | T | T |  |  |  |  |  | S |  | T | T | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 10 | . | . | . | . | . | . | . | . | . |  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | .
|  | 136 | . | . | . | 140 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | S | P | G | T | P | Q | S | K | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | Y | E | A | K | S | G | P | S | S
Template Known Secondary structure |  | S |  | S |  |  |  |  |  | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |
|  | 69 | 70 | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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