Phyre 2 alignment of A2A5E6 with c2iykB_

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Job Description | A2A5E6
Confidence | 44.99% | Date | Wed Jul 10 14:22:42 BST 2013
Rank | 221 | Aligned Residues | 39
% Identity | 18% | Template | c2iykB_
PDB info | PDB header:hydrolase | Chain: B: PDB Molecule:regulator of nonsense transcripts 1; | PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
Resolution | 2.95 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . |  |  |  |  |  |  | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 110 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Query Sequence |  | K | K | L | F | I | S | C | N | I | C | H | L | R | F | . | . | . | . | . | . | N | S | A | N | Q | A | E | A | H | Y | K | G | H | R | H | A | R | K | . | . | . | . | . | . | . | . | . | . | . | . | L | K | A | V | E | A | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | A | C | V | V | Y | C | N | T | S | K | K | W | F | C | N | G | R | G | N | T | S | G | S | H | I | V | N | H | L | V | R | A | K | C | K | E | V | T | L | H | K | D | G | P | L | G | E | T | V | L | E | C | Y | N | C | G
Template Known Secondary structure |  | T | T | T |  |  |  |  | T | T | T | T |  |  |  |  | S |  |  | T | T | S | S | S |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | S | T | T |  | S |  | B |  |  |  | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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