12/07/2013 16:15:54 : INFO  : Run start: Fri Jul 12 16:15:54 BST 2013
12/07/2013 16:15:54 : INFO  : Initialised job
12/07/2013 16:15:54 : INFO  : Initialised job:
Sequence
>batch____
MLLGPASGSPSPLLASLTLPARPLQPPLDLKHLLAFHLNGTTPLSLFPNFSTMDPVQKAV
ISHTFGVPSPLKKKLFISCNICHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNP
TTNGTVVSSASPPASGSPGTPQSKGPASPPLGPSLQLPPTPDPSAGDPVHSAGDPVHSEL
CDAAASSSSSSCPPCSPDPSREAPGPEPAEGAVGSGVNGEGRGEKGRLYCPTCKVTVNSA
SQLQAHNTGAKHRWMVEGHQGAPRRGRGRPVSRGGTGHKTKRVIGNRGGRQGPSPPFHCA
LCQLHVNSETQLKQHMSSRRHKDRLAGKPPKSSSQHNKLQKHTALAVSVLKSKLALQKQL
TKTLAARFLPGPLPTTAAAICALPGPLTLRPAATAAATLFPAPVLGPALFRSPAGAVRPA
AGPILFAPY

12/07/2013 16:15:54 : INFO  : Checked sequence
12/07/2013 16:15:55 : INFO  : Finding homologues with PSI-BLAST
12/07/2013 16:15:55 : INFO  : PSI-BLAST 3 iterations
12/07/2013 16:18:20 : INFO  : PSI-BLAST 5 iterations
12/07/2013 16:23:27 : INFO  : Finished PSI-BLAST
12/07/2013 16:23:27 : INFO  : Running Buildali to generate a3m file
12/07/2013 16:43:42 : INFO  : Converting to HMM
12/07/2013 16:43:44 : INFO  : Calibrating HMM
12/07/2013 16:43:53 : INFO  : Searching HMM database
12/07/2013 17:01:30 : INFO  : Finished buildali
12/07/2013 17:01:30 : INFO  : Predicting secondary structure
12/07/2013 17:01:31 : INFO  : Predicted secondary structure (PSI-Pred)
12/07/2013 17:01:31 : INFO  : Predicting Disordered regions
12/07/2013 17:01:31 : INFO  : Predicted Disorder (Disopred)
12/07/2013 17:01:31 : INFO  : Running memsat_svm check
12/07/2013 17:01:59 : INFO  : Running memsat_svm full
12/07/2013 17:05:30 : INFO  : Predicted Transmembrane (memsat_svm) ID '4f3837bd0100a348'
12/07/2013 17:05:30 : INFO  : Initialising fold library search
12/07/2013 17:05:30 : INFO  : Initialised search input
12/07/2013 17:05:30 : INFO  : Building Ensemble models
12/07/2013 17:05:30 : INFO  : Building hh.c4ijdA_.model.1.pdb
12/07/2013 17:05:31 : INFO  : Building hh.c1tf6D_.model.2.pdb
12/07/2013 17:05:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/hh.c1tf6D_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/c1tf6D_.2.pdb
12/07/2013 17:05:31 : INFO  : Building hh.c1zu1A_.model.3.pdb
12/07/2013 17:05:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/hh.c1zu1A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/c1zu1A_.4.pdb
12/07/2013 17:05:32 : INFO  : Building hh.c3k1qC_.model.4.pdb
12/07/2013 17:05:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/hh.c3k1qC_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/c3k1qC_.157.pdb
12/07/2013 17:05:33 : INFO  : Building hh.d1x6fa1.model.5.pdb
12/07/2013 17:05:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/hh.d1x6fa1.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4f3837bd0100a348/d1x6fa1.190.pdb
12/07/2013 17:05:34 : INFO  : Building c4ijdA_.1.pdb
12/07/2013 17:05:35 : INFO  : Building c1tf6D_.2.pdb
12/07/2013 17:05:35 : INFO  : Building c2dmiA_.3.pdb
12/07/2013 17:05:36 : INFO  : Building c1zu1A_.4.pdb
12/07/2013 17:05:36 : INFO  : Building c2rpcA_.5.pdb
12/07/2013 17:05:37 : INFO  : Building c2ee8A_.6.pdb
12/07/2013 17:05:37 : INFO  : Building c1wjpA_.7.pdb
12/07/2013 17:05:38 : INFO  : Building c2rsiA_.8.pdb
12/07/2013 17:05:38 : INFO  : Building c2dmdA_.9.pdb
12/07/2013 17:05:39 : INFO  : Building c2wbtA_.10.pdb
12/07/2013 17:05:40 : INFO  : Building c2cshA_.11.pdb
12/07/2013 17:05:40 : INFO  : Building c2kmkA_.12.pdb
12/07/2013 17:05:41 : INFO  : Building c2rsjA_.13.pdb
12/07/2013 17:05:41 : INFO  : Building c1g2dC_.14.pdb
12/07/2013 17:05:41 : INFO  : Building c1x6hA_.15.pdb
12/07/2013 17:05:42 : INFO  : Building c2ebtA_.16.pdb
12/07/2013 17:05:42 : INFO  : Building c2yt9A_.17.pdb
12/07/2013 17:05:43 : INFO  : Building c2dlqA_.18.pdb
12/07/2013 17:05:43 : INFO  : Building c2lv2A_.19.pdb
12/07/2013 17:05:43 : INFO  : Building c2i13A_.20.pdb
12/07/2013 17:05:50 : INFO  : Finished HH model building
12/07/2013 17:05:50 : WARN  : Set python to /bmm/www/servers/phyre2/bin//python2.7/2.7.2/bin/python2.7
12/07/2013 17:05:56 : INFO  : html domain output complete ID '4f3837bd0100a348'
12/07/2013 17:32:12 : INFO  : Run end  : Fri Jul 12 17:32:12 BST 2013
