Job Description P48025 Confidence 100.00% Date Wed Jul 10 14:17:05 BST 2013 Rank 290 Aligned Residues 236 % Identity 22% Template c4bgqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cyclin-dependent kinase-like 5; PDBTitle: crystal structure of the human cdkl5 kinase domain Resolution 2.00 Å

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		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	E	D	N	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P
Query Conservation
Alig confidence																												.	.										.	.	.	.	.	.	.
Template Conservation																												.	.										.	.	.	.	.	.	.
Template Sequence		F	E	I	L	G	V	V	G	E	G	A	Y	G	V	V	L	K	C	R	H	K	E	T	H	E	I	.	.	V	A	I	K	K	F	K	V	K	.	.	.	.	.	.	.	E	T	T	L	R	E	L	K	M	L	R	T	L	K	Q	E
Template Known Secondary structure											S	S	S									T	T	T				.	.										.	.	.	.	.	.	.													T		S	T
Template Predicted Secondary structure																												.	.										.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		425	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		Y	I	V	R	M	I	G	I	C	.	E	A	E	S	W	M	L	V	M	E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	R	H	I	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		N	I	V	E	L	K	E	A	F	R	R	R	G	K	L	Y	L	V	F	E	Y	V	E	K	N	M	L	E	L	L	E	E	M	P	N	G	V	P	P	E	K	V	K	S	Y	I	Y	Q	L	I	K	A	I	H	W	C	H	K	N	D
Template Known Secondary structure		T	B										T	T										S										S	T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y	K	A	Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	H	R	D	I	K	P	E	N	L	L	I	S	H	N	D	V	L	K	L	C	D	F	G	F	A	R	N	L	S	E	T	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	S	P	E	L	L	L	G	A	P	Y
Template Known Secondary structure									G	G	G					T	T									T	T				T	T				T	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.														.	.	.	.	170	.	.	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	R	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.
Template Sequence		G	K	S	V	D	M	W	S	V	G	C	I	L	G	E	L	S	D	.	G	Q	P	L	F	P	G	E	S	E	I	D	Q	L	F	T	I	Q	K	V	L	G	P	L	P	S	E	Q	M	K	L	F	Y	S	N	P	R	F	H	G	L
Template Known Secondary structure			T																	.	S			S				S	S														S												S	G	G	G	T	T
Template Predicted Secondary structure																				.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
																587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N	R	P	G	F	T	A	V	E	L	R	L	R	N	Y	Y	Y	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation																																														.	.	.
Template Sequence		R	F	P	A	V	N	H	P	Q	S	L	E	R	R	Y	L	G	I	L	N	S	V	L	L	D	L	M	K	N	L	L	K	L	D	P	A	D	R	Y	L	T	E	Q	C	.	.	.	L	N	H	P	T	F	Q
Template Known Secondary structure							S	S									T	T	T	S												S		S	S	G	G	G	S							.	.	.		T	S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D