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Job DescriptionP48025
Confidence100.00%DateWed Jul 10 14:17:05 BST 2013
Rank306Aligned Residues235
% Identity20%Templatec3oz6A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase 1, serine/threonine PDBTitle: crystal structure of mapk from cryptosporidium parvum, cgd2_1960
Resolution2.37 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   377..380.........390.........400.........410.........420.. .......430...
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Query Sequence  GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLD. NPYIVRMIGIC. .
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Template Sequence  KIVWKSIDRRTGEV. . VAVKKIFDQ. . NSTDAQRTFREIMILTELSGHENIVNLLNVLRA
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   16...20......... 30........ .40.........50.........60.........70.
 
   434.....440.........450.........460.........470.........480.........490..
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Query Sequence  . EAESWMLVMEMAELGPLNKYLQQNRHIKDKNIIELVHQVSMGMKYLEESNFVHRDLAAR
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Template Sequence  DNDRDVYLVFDYME. TDLHAVI. RANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPS
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GG
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   81........90.... .....100. ........110.........120.........130........
 
   493......500.........510.........520........ .530.........540........
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Query Sequence  NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW. . . . PVKWYAPECINYYKFSSKSD
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Template Sequence  NILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINYVATRWYRAPEILLGSTKYTKGID
Template Known Secondary structure  G
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   139140.........150.........160.........170.........180.........190........
 
   549550.........560.........570.........580......
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Query Sequence  VWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMG. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  MWSLGCILGEILC. GKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKE
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   214.....220...... ...230.........240.........250.........260.........270..
 
   587..590.........600.........610........
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Query Sequence  . . . . . . . . . . . . . . . . . . . CPAGCPREMYDLMNLCWTYDVENRPGFTAVEL
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Template Sequence  KVEKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALK
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   273......280.........290.........300.........310.........320...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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