Job Description P48025 Confidence 99.95% Date Wed Jul 10 14:17:05 BST 2013 Rank 329 Aligned Residues 167 % Identity 27% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																												.																	.
Query SS confidence																																												.																	.
Query Sequence		T	Y	F	F	G	N	I	T	R	E	E	A	E	D	Y	L	V	Q	G	G	M	T	D	G	L	Y	L	L	R	Q	S	R	N	Y	L	G	G	F	A	L	S	V	.	A	H	N	R	K	A	H	H	Y	T	I	E	R	E	L	N	.
Query Conservation																																												.																	.
Alig confidence						.															.	.																						.																	.
Template Conservation						.															.	.
Template Sequence		P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	.	.	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E
Template Known Secondary structure		T	T			.												T	T	S	.	.		T	T								S	S		T	T										T	T											S		S
Template Predicted Secondary structure						.															.	.
Template SS confidence
		7	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
							71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	T	Y	A	I	S	G	G	R	A	H	A	S	P	A	D	L	C	H	Y	H	S	Q	E	P	D	G	L	I	C	L	L	K	K	P	F	N	R	P	P	G	V	Q	P	K	T	G	P	F	E	D	L	K	E	N
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T	S			S					T	T				S	S								T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	E	Y	V	K	Q	T	W	N	L	Q	G	Q	A	L	E	Q	A	I	I	S	Q	K	P	Q	L	E	K	L	I	A	T	T	A	H	E	K	M	P	W	F	H	G	N	I	S	R	D	E	S	E	Q	T	V	L	I	G	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	I	R	L	L	N	E	L	T	S	N	E	K	.	.	F	K	A	G	.	.	T	K	K	E	V	V	K	F	I	E	D	Y	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	S	T	T	.	.				S	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.	.
Template SS confidence
																											92	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.
		186	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.														.	.
Query SS confidence											.	.	.	.														.	.
Query Sequence		K	T	N	G	K	F	L	I	R	.	.	.	.	A	R	D	N	S	G	S	Y	A	L	C	L	L	.	.	H	E	G	K	V	L	H	Y	R	I	D	R	D	K	T	G	K	L	S	I	P	E	G	K	K	F	D	T	L	W	Q	L
Query Conservation											.	.	.	.														.	.
Alig confidence											.	.	.	.														.	.																				.	.
Template Conservation																																																	.	.
Template Sequence		K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L	I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	F	F	L	.	.	V	N	Y	N	Y	P	T	V	I	Q	L
Template Known Secondary structure					T	T										T	T	S	T	T								S	S	T	T	S											S	S	S				.	.	T	T				S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180
		240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	H	Y	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	N	G	F	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D