Job Description P29351 Confidence 100.00% Date Wed Jul 10 14:09:17 BST 2013 Rank 50 Aligned Residues 168 % Identity 18% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.										.	.	.
Query SS confidence																																																	.										.	.	.
Query Sequence		R	W	F	H	R	D	L	S	G	P	D	A	E	T	L	L	K	G	R	G	V	P	G	S	F	L	A	R	P	S	R	K	N	Q	G	D	F	S	L	S	V	R	V	D	D	Q	V	.	T	H	I	R	I	Q	N	S	G	.	.	.
Query Conservation																																																	.										.	.	.
Alig confidence						.															.																												.										.	.	.
Template Conservation						.															.
Template Sequence		P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	.	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N
Template Known Secondary structure		T	T			.												T	T	S	.		T	T								S	S		T	T										T	T											S		S	S
Template Predicted Secondary structure						.															.
Template SS confidence
		7	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
						59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	D	F	Y	D	L	Y	G	G	E	K	F	A	T	L	T	E	L	V	E	Y	Y	T	Q	Q	Q	G	I	L	Q	D	R	D	G	T	I	I	H	L	K	Y	P	L	N	C	S	D	P	T	S	E	R	W	Y	H	G	H
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	N	K	I	R	L	L	N	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	E	K	F	K	A	G	.
Template Known Secondary structure		T	T	S			S					T	T				S	S								T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T	T				S	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.															.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure														.											.	.	.
Query SS confidence														.											.	.	.
Query Sequence		I	S	G	G	Q	A	E	S	L	L	Q	A	.	K	G	E	P	W	T	F	L	V	R	.	.	.	E	S	L	S	Q	P	G	D	F	V	L	S	V	L	N	D	Q	P	K	A	G	P	G	S	P	L	R	V	T	H	I	K	V	M
Query Conservation														.											.	.	.
Alig confidence		.												.											.	.	.																				.	.	.	.	.	.	.
Template Conservation		.																																													.	.	.	.	.	.	.
Template Sequence		.	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L	I	F	K	L	N	A	E	S	.	.	.	.	.	.	.	K	L	Y	I	W	N	V	K
Template Known Secondary structure		.																	T	T										T	T	S	T	T								S	S	T	T	S	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																													.	.	.	.	.	.	.
Template SS confidence
			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	G	G	R	Y	T	V	G	G	S	E	T	F	D	S	L	T	D	L	V	E	H	F	K	K
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		L	T	H	T	G	F	F	L	.	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T
Template Known Secondary structure				S	S	S				.	T	T				S	S
Template Predicted Secondary structure										.
Template SS confidence
		162	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D