Job Description P29351 Confidence 99.97% Date Wed Jul 10 14:09:17 BST 2013 Rank 51 Aligned Residues 160 % Identity 20% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		R	W	F	H	R	D	L	S	G	P	D	A	E	T	L	L	K	G	R	G	V	P	G	S	F	L	A	R	P	S	R	K	N	Q	G	D	F	S	L	S	V	R	V	D	D	Q	V	.	T	H	I	R	I	Q	N	S	G	D	F	Y
Query Conservation																																																	.
Alig confidence						.															.	.										.																	.
Template Conservation						.															.	.										.
Template Sequence		P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	S	.	.	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y
Template Known Secondary structure		T	T			.														S	.	.	S									.	S	S	T	T										T	T											S	S
Template Predicted Secondary structure						.															.	.										.
Template SS confidence
		793	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810			.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Y	G	G	E	K	F	A	T	L	T	E	L	V	E	Y	Y	T	Q	Q	Q	G	I	L	Q	D	R	D	G	T	I	I	H	L	K	Y	P	L	N	C	S	D	P	T	S	E	R	W	Y	H	G	H	I	S	G	G	Q	A	E
Query Conservation
Alig confidence				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		T	C	.	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	K	A	H	A	K	Y	F	N	S	P	E	.	.	D	A	E
Template Known Secondary structure				.	T	T				S	S								T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	T	T	B		S		T	T	.	.	T	S
Template Predicted Secondary structure				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		849	850		.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.																.	.	.	.	.	880	.	.	.	.	.	.	.			.	.	890
		122	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		S	L	L	Q	A	K	G	.	E	P	W	T	F	L	V	R	E	S	L	S	Q	P	G	D	F	V	L	S	V	L	N	D	Q	P	K	A	G	P	G	S	P	L	R	V	T	H	I	K	V	M	C	E	G	G	R	Y	T	V	G	G
Query Conservation									.
Alig confidence									.																										.	.	.	.	.	.	.	.	.									.				.				.
Template Conservation																																			.	.	.	.	.	.	.	.	.									.				.				.
Template Sequence		K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	.	.	.	.	.	.	.	.	.	I	L	E	E	Y	I	G	V	.	S	D	M	.	L	T	Y	.	N
Template Known Secondary structure						T			S	S	S									S	S	S	T	T								S	S	S	.	.	.	.	.	.	.	.	.									.	S	S	S	.				.	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.									.				.				.
Template SS confidence
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.										.	.	.	.	.	.	930	.		.	.	.		.	.	.		.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	F	D	S	L	T	D	L	V	E	H	F	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		T				S	S
Template Predicted Secondary structure
Template SS confidence
		939	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D