Job Description P29351 Confidence 100.00% Date Wed Jul 10 14:09:17 BST 2013 Rank 29 Aligned Residues 261 % Identity 38% Template c2qcjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type PDBTitle: native structure of lyp Resolution 3.00 Å

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		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		A	K	A	G	F	W	E	E	F	E	S	L	Q	K	Q	E	V	K	.	.	.	.	N	L	H	Q	R	L	E	G	Q	R	P	E	N	K	S	K	N	R	Y	K	N	I	L	P	F	D	H	S	R	V	I	L	Q	G	R	D	S	N
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.																																					.
Template Conservation																																																												.
Template Sequence		T	K	E	E	F	A	N	E	F	L	K	L	K	R	Q	S	T	K	Y	K	A	D	K	T	Y	P	T	T	V	A	E	K	P	K	N	I	K	K	N	R	Y	K	D	I	L	P	Y	D	Y	S	R	V	E	L	S	L	I	T	.	S
Template Known Secondary structure		S										T				S	S		S	S	S		S		S	S							S	G	G	G	G	G	G		S	S	S	S					T	T	T								S	.	S
Template Predicted Secondary structure																																																												.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	G	S	D	Y	I	N	A	N	Y	V	K	N	Q	L	L	G	P	D	E	N	S	K	T	Y	I	A	S	Q	G	C	L	D	A	T	V	N	D	F	W	Q	M	A	W	Q	E	N	T	R	V	I	V	M	T	T	R	E	V	E
Query Conservation
Alig confidence																	.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence		D	E	D	S	S	Y	I	N	A	N	F	I	K	G	V	.	.	.	.	.	Y	G	P	K	A	Y	I	A	T	Q	G	P	L	S	T	T	L	L	D	F	W	R	M	I	W	E	Y	S	V	L	I	I	V	M	A	C	M	E	Y	E
Template Known Secondary structure		S	S			S										S	.	.	.	.	.	S		T	T	S									T	T	T											T	T								S		S		S
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		K	G	R	N	K	C	V	P	Y	W	P	E	V	.	G	T	Q	R	V	Y	G	L	Y	S	V	T	N	S	R	E	H	D	T	A	E	Y	K	L	R	T	L	Q	I	S	P	L	D	N	G	D	L	V	R	E	I	W	H	Y	Q	Y
Query Conservation															.
Alig confidence															.																															.	.	.
Template Conservation																																														.	.	.
Template Sequence		M	G	K	K	K	C	E	R	Y	W	A	E	P	G	E	M	Q	L	E	F	G	P	F	S	V	S	C	E	A	E	K	R	K	S	D	Y	I	I	R	T	L	K	V	K	.	.	.	F	N	S	E	T	R	T	I	Y	Q	F	H	Y
Template Known Secondary structure		S	S	S										S	S	S						T	T												S	S										.	.	.		S	S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	W	P	D	H	G	V	P	S	E	P	G	G	V	L	S	F	L	D	Q	I	N	Q	R	Q	E	S	L	P	H	A	G	P	I	I	V	H	C	S	A	G	I	G	R	T	G	T	I	I	V	I	D	M	L	M	E	S	I	S
Query Conservation
Alig confidence																										.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		K	N	W	P	D	H	D	V	P	S	S	I	D	P	I	L	E	L	I	W	D	V	R	C	.	.	.	.	.	.	Y	S	V	P	I	C	I	H	C	S	A	G	C	G	R	T	G	V	I	C	A	I	D	Y	T	W	M	L	L	K
Template Known Secondary structure						S	S	S			S															.	.	.	.	.	.										S	S	S	S																	T
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	G	L	D	C	D	I	D	I	Q	K	T	I	Q	M	V	R	A	Q	R	S	G	M	V	Q	T	E	A	Q	Y	K	F	I	Y	V	A	I	A	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	I	I	P	E	N	F	S	V	F	S	L	I	R	E	M	R	T	Q	R	P	S	L	V	Q	T	Q	E	Q	Y	E	L	V	Y	N	A	V	L	E	L
Template Known Secondary structure		S				T	T	T											T	T	T	S	T	T	T	T																T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D