Job Description O89032 Confidence 34.53% Date Wed Jul 10 14:33:53 BST 2013 Rank 315 Aligned Residues 61 % Identity 18% Template c2zkqc_ PDB info PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Resolution 8.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Y	C	V	Q	D	A	T	V	V	D	V	E	K	R	R	S	P	S	K	H	Y	V	Y	I	I	N	V	T	W	S	D	S	T	S	Q	T	I	Y	R	R	Y	S	K	F	F	D	L	Q	M	Q	L	L	D	K	F	P	I	E
Query Conservation
Alig confidence																												.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		L	T	R	E	L	A	E	D	G	Y	S	G	V	E	V	R	V	T	P	T	R	T	E	I	I	I	.	.	.	.	L	A	T	R	T	Q	N	V	L	G	E	K	G	R	R	I	R	E	L	T	A	V	V	Q	K	R	F	G	F	P
Template Known Secondary structure						T		T	T	T							B			T	T							.	.	.	.			S								G	G	G														S		T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		62	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	S	V	E
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D