Job Description Q60992 Confidence 100.00% Date Wed Jul 10 14:34:39 BST 2013 Rank 22 Aligned Residues 296 % Identity 23% Template c2z0qA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 3; PDBTitle: crystal structure of dh-ph domain of rhogef3(xpln) Resolution 1.79 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		M	T	E	D	D	K	R	S	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	G	P	L	R	L	.	.	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I	K	V
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		T	A	K	E	I	K	R	Q	E	A	I	F	E	L	S	Q	G	E	E	D	L	I	E	D	L	K	L	A	K	K	A	Y	H	D	P	X	L	K	L	S	I	X	T	E	Q	E	L	N	Q	I	F	G	T	L	D	S	L	I	P	L
Template Known Secondary structure																																	T							T	T	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		H	H	S	F	L	R	A	I	D	V	S	M	M	A	G	G	.	.	S	T	L	A	K	V	F	L	E	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	S	T	L	N	Q	L	L	A	S	R	E	D	F	R
Query Conservation																		.	.
Alig confidence																		.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	E	L	L	S	Q	L	R	D	V	R	K	P	D	G	S	T	E	H	V	G	P	I	L	V	G	W	L	P	C	L	S	S	Y	D	S	Y	C	S	N	Q	V	A	A	K	A	L	L	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T	S			S										G	G	G	G	G																	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		Q	K	V	E	E	C	T	L	R	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	K	E	L	L	S	H	S	A	.	D	R	P	E	R	Q	Q	L	K	E	A	L	E	A	M	Q
Query Conservation																																													.
Alig confidence		.	.	.																																									.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	H	K	K	Q	D	H	R	V	Q	D	F	D	L	W	N	F	L	D	I	P	R	S	R	L	V	K	Y	P	L	L	L	R	E	I	L	R	H	T	P	N	D	N	P	D	Q	Q	H	L	E	E	A	I	N	I	I	Q
Template Known Secondary structure		.	.	.				T	T									T	T	T	G	G	G																			T	S		T	T	S	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	K	K	I	S	E	F	Q	C	S	I	E	N	L	Q	V	K	L	E	E	F	G	R	.	P	K	I	D	G	E	L	K	V	R	S	I	V	N	H	T	K	Q	D	R	Y
Query Conservation																																								.
Alig confidence																																								.									.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		G	I	V	A	E	I	N	T	K	T	G	E	S	E	C	R	Y	Y	K	E	R	L	L	Y	L	E	E	G	Q	K	D	S	L	I	D	S	S	R	V	L	C	C	H	G	E	L	K	.	.	.	.	.	N	N	R	G	V	K	L	H
Template Known Secondary structure																											S	T	T								T												.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.						.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.												.	460	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	S	.	.	.	.	.	Y	E	L	K	E	V	I	E	L	L	F	H	K	M	T	D	D	P	M	H	.	.	.	.	.	.	.	.	.	.	.	N	K	D	I	K	K	W
Query Conservation																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	L	F	Q	E	V	L	V	I	T	R	A	V	T	H	N	E	Q	L	C	Y	Q	L	Y	R	Q	P	I	P	V	K	D	L	T	L	E	D	L	Q	D	G	E	V	R	L	G	G	S	L	A	F	S	N	N	E	R	V	K	N
Template Known Secondary structure						S	S											T	T							S	S					G	G	G								T	T	T	S				S					S					T	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	G	F	Y	L	I	H	L	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q	F	E	M	A	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	F	R	V	S	F	K	N	G	S	Q	S	Q	T	H	S	L	Q	A	N	D	T	F	N	K	Q	Q	W	L	N	C	I	R	Q	A	K	E
Template Known Secondary structure										G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D