Job Description Q60992 Confidence 100.00% Date Wed Jul 10 14:34:39 BST 2013 Rank 20 Aligned Residues 290 % Identity 24% Template c1lb1C_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:guanine nucleotide exchange factor dbs; PDBTitle: crystal structure of the dbl and pleckstrin homology2 domains of dbs in complex with rhoa Resolution 2.81 Å Model Dimensions (Å) X:66.657 Y:60.220 Z:44.276

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		D	D	K	R	S	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	G	P	L	R	L	.	.	.	.	.	.	.	.	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	L	R	R	H	V	M	N	E	L	L	D	T	E	R	A	Y	V	E	E	L	L	C	V	L	E	G	Y	A	A	E	M	D	N	P	L	M	A	H	L	I	S	T	G	L	Q	N	K	K	N	I	L	F	G	N	M	E	E	I
Template Known Secondary structure																														T	T	G	G	G	G		G	G	G	G	G	G	S							T						T	T
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	V	H	H	S	F	L	R	A	I	D	V	S	M	M	A	G	G	S	T	L	A	K	V	F	L	E	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	S	T	L	N	Q	L	L	A	S	R	E	D	F
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		Y	H	F	H	N	R	I	F	L	R	E	L	E	S	C	I	D	C	P	E	L	V	G	R	C	F	L	E	R	M	E	E	F	Q	I	Y	E	K	Y	C	Q	N	K	P	R	S	E	S	L	W	R	Q	.	C	S	D	C	P	F	F
Template Known Secondary structure								T							T	T	S	S		G	G	G							T	T	T	T	G	G	G																			.		T	T	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.		.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	K	V	E	E	C	T	L	R	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	K	E	L	L	S	H	S	A	D	R	P	E	R	Q	Q	L	K	E	A	L	E	A	M	Q
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		Q	E	C	Q	K	K	L	D	.	.	.	.	.	H	K	L	S	L	D	S	Y	L	L	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E	M	L	K	Y	S	K	H	C	E	G	A	E	D	L	Q	E	A	L	S	S	I	L
Template Known Secondary structure									T	.	.	.	.	.		S	S							T							T	T											T		T	T	S	T	T
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		749	750	.	.	.	.	.	.						.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.						.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	K	K	I	S	E	F	Q	C	S	I	E	N	L	Q	V	K	L	E	E	F	G	R	P	K	I	D	G	E	L	K	V	R	S	I	V	.	.	.	.	.	N	H	T	K
Query Conservation																																																					.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	L	K	A	V	N	D	S	M	H	L	I	.	.	.	.	.	.	.	.	.	.	.	A	I	T	G	Y	D	G	N	L	G	D	L	G	K	L	L	M	Q	G	S	F	S	V	W	T	D	H	K	K	G	L	A	R	F	K	P
Template Known Secondary structure														T	.	.	.	.	.	.	.	.	.	.	.	T					S	S		S	G	G	G																					S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		804	.	.	.	.	.	810	.	.	.	.	.	.												.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.										.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	R	Y	L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	.	.	.	.	.	.	.	.	.	S	Y	E	L	K	E	V	I	E	L	L	F	H	K	M	T	D	D	P	M	H	N	K	D	I	K	K	W	S	Y	G
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		M	Q	R	H	L	F	L	H	E	K	A	V	L	F	C	K	K	R	E	E	N	G	E	G	Y	E	K	A	P	S	Y	S	Y	K	Q	S	L	N	M	T	A	V	G	I	T	E	N	V	K	G	D	.	.	.	.	.	.	T	K	K
Template Known Secondary structure										S	S												S	S	S	G	G	G	S											G	G	G							B	T	T	B	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		859	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.							910	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	L	I	H	L	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q	F	E	M	A	M	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	I	W	Y	N	A	R	E	E	V	Y	I	I	Q	A	P	T	P	E	I	K	A	A	W	V	N	E	I	R	K	V	L	T	S
Template Known Secondary structure							G	G	G	T								S	S
Template Predicted Secondary structure
Template SS confidence
		913	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D