Job Description Q60992 Confidence 100.00% Date Wed Jul 10 14:34:39 BST 2013 Rank 21 Aligned Residues 304 % Identity 21% Template c1ki1B_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:intersectin long form; PDBTitle: guanine nucleotide exchange region of intersectin in2 complex with cdc42 Resolution 2.30 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		M	T	E	D	D	K	R	S	C	C	L	L	E	I	Q	E	T	E	A	K	Y	Y	R	T	L	E	D	I	E	K	N	Y	M	G	P	L	R	L	.	.	V	L	S	P	A	D	M	A	A	V	F	I	N	L	E	D	L	I	K	V
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		T	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C
Template Known Secondary structure																																	T								T	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		1232	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		H	H	S	F	L	R	A	I	D	V	S	M	M	A	G	G	.	.	.	.	.	S	T	L	A	K	V	F	L	E	F	K	E	R	L	L	I	Y	G	E	Y	C	S	H	M	E	H	A	Q	S	T	L	N	Q	L	L	A	S	R	E
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		N	I	K	L	L	K	A	L	R	V	R	K	K	M	S	G	E	K	M	P	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P
Template Known Secondary structure																		T	T	S													G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		1292	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		D	F	R	Q	K	V	E	E	C	T	L	R	V	Q	D	G	K	F	K	L	Q	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	L	L	L	K	E	L	L	S	H	S	A	.	D	R	P	E	R	Q	Q	L	K	E	A	L	E
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		D	F	K	E	F	V	K	R	L	E	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N	I	L	E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E
Template Known Secondary structure												T	S	G	G	G	T	T							T	T																		T	T	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		1352	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.											.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	Q	D	L	A	M	Y	I	N	E	V	K	R	D	K	E	T	L	K	K	I	S	E	F	Q	C	S	I	E	N	L	.	.	.	.	.	.	.	.	.	.	Q	V	K	L	E	E	F	G	R	P	K	I	D	G	E	L	K	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																																												.	.
Template Sequence		K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K	L	.	.
Template Known Secondary structure																												T	T							S	S				S	S	S	B		S	S	S	S	B										.	.
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		1412	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.										.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		R	S	I	V	N	H	T	K	Q	D	R	Y	L	F	L	F	D	K	V	V	I	V	C	K	R	K	G	Y	.	.	.	.	.	.	.	.	.	S	Y	E	L	K	E	V	I	E	L	L	F	H	K	M	T	D	D	P	M	H	N	K
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.																											.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	Y	K	A	K	N	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	K	V	F	S	P	K	S	N	L	Q	Y	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G
Template Known Secondary structure		.	.	B		S	S	S										S	S													S		S	S								S	S				G	G	G							S	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	K	K	W	S	Y	G	F	Y	L	I	H	L	Q	G	K	Q	G	F	Q	F	F	C	K	T	E	D	M	K	R	K	W	M	E	Q	F	E	M	A	M	S	N	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	.	.	.	F	H	I	S	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E	L	Y
Template Known Secondary structure			.	.	.	.	.	.	.	.	.						T	T						B		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		1535										.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D