Job Description Q8CG79 Confidence 87.92% Date Tue Jul 30 13:24:09 BST 2013 Rank 355 Aligned Residues 282 % Identity 11% Template c4jioA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:bro1; PDBTitle: bro1 v domain and ubiquitin Resolution 3.60 Å

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		17	.	.	20					.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		F	T	E	V	.	.	.	.	P	V	T	P	E	T	I	C	R	D	V	V	D	L	C	K	E	P	G	E	N	D	C	H	L	A	E	V	W	C	G	S	E	R	P	V	A	D	N	E	R	M	F	D	V	L	Q	R	F	G	S	Q
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.
Template Conservation
Template Sequence		F	T	E	I	Y	E	K	E	S	I	Y	S	E	E	K	A	Q	L	L	R	K	E	X	E	S	V	E	T	A	D	L	E	Y	T	S	F	V	E	F	T	N	L	P	K	L	I	N	D	L	A	A	A	Y	T	P	Q	L	E	X	X
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	E	V	R	F	F	L	R	H	E	R	P	P	N	R	D	I	V	S	G	P	R	S	Q	D	P	S	V	K	R	N	G	V	K	V	P	G	E	H	R	R	K	E	N	G	V	N	S	P	R	L	D	L	T	L	A	E	L	Q
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.
Template Sequence		R	D	Q	I	K	S	W	A	Y	A	V	Q	Q	N	E	F	N	D	.	.	.	.	.	.	.	.	.	I	E	R	I	I	N	V	I	S	S	K	R	K	E	I	L	D	I	L	A	L	P	A	E	E	K	E	N	I	L	K	L	K
Template Known Secondary structure															S	T	T	T	T	.	.	.	.	.	.	.	.	.	T		T																					S	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.										.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R	L	K	F	L	K	Q	Q	D	Q	R	Q	Q	Q	Q	A	A	E	Q	E	K	L	K	R	L	R	E	I	A	E	S	Q	E	A	K	L	K	K
Query Conservation
Alig confidence																																													.	.
Template Conservation																																													.	.
Template Sequence		A	S	L	V	E	A	S	Q	S	D	E	K	L	F	R	L	I	K	P	Y	V	A	E	I	K	L	L	C	N	D	S	S	L	W	R	K	F	D	D	S	K	T	E	.	.	L	I	L	S	K	L	K	A	I	T	Q	F	A	E	D
Template Known Secondary structure															T	T	T																												.	.
Template Predicted Secondary structure																																													.	.
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.			.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	I	E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	L	L	K	E	E	R	A	R	T	X	G	E	L	K	D	Y	V	N	N	N	D	D	I	T	S	L	L	L	A	N	K	D	K	S	D	A	E	L	Q	S	L	F	E	S	E	L	A	K	F	E	P	L	T	T	R	I	E	A
Template Known Secondary structure																					S	S	S				G	G	G			S	T	T			S	S	S	S	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	K	V	E	E	L	T	R	Q	L	E	M	L	K	N	G	R	I	D	G	H	H	D	N	Q	S	A	V	A	E	L	D	R	L	Y	K	E	L	Q	L	R	N	K	L	N	Q	E	Q	N	A	K	L	Q	Q	Q	R	E	C
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		T	I	F	K	Q	G	S	T	I	N	G	V	K	I	E	L	D	N	I	F	G	L	T	.	G	I	Q	D	K	T	P	E	E	Q	K	A	E	L	E	R	K	L	F	F	D	K	L	E	E	A	T	T	K	F	T	I	F	S	S	D
Template Known Secondary structure																									.	S			S																	T	T
Template Predicted Secondary structure																									.
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.		.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	R	N	S	E	V	A	V	M	D	K	R	V	S	E	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	K	G	L	N	F	Y	N	S	L	L	K	X	S	K	D	L	Q	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D