Job Description Q8CG79 Confidence 94.02% Date Tue Jul 30 13:24:09 BST 2013 Rank 339 Aligned Residues 319 % Identity 9% Template c4hpqC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:atg17; PDBTitle: crystal structure of the atg17-atg31-atg29 complex Resolution 3.06 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	V	Y	L	S	N	S	E	Q	H	F	T	E	V	P	V	T	P	E	T	I	C	R	D	V	V	D	L	C	K	E	P	G	E	N	D	C	H	L	A	E	V	W	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	L	I	C	Q	E	S	N	D	H	L	T	T	T	K	L	R	I	R	E	W	Q	K	F	Q	S	K	L	H	F	V	L	D	C	I	Q	Q	Q	T	K	F	L	S	E	I	L	L	R	E	G	I	G	R	N	L	I	E	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	S	E	R	P	V	A	D	N	E	R	M	F	D	V	L	Q	R	F	G	S	Q	R	N	E	V	R	F	F	L	R	H	E	R	P	P	N	R	D	I	V	S	G	P	R	S	Q	D	P	S	V	K	R	N	G	V	K	V	P
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		W	S	Q	T	V	L	V	R	L	V	N	D	M	K	F	W	Q	N	E	I	T	K	M	M	N	K	L	D	N	I	T	N	E	I	D	Q	Q	H	N	S	K	L	G	D	F	I	S	R	D	S	S	H	I	L	D	S	K	L	N	E
Template Known Secondary structure							T	T																						T	S					S	S	S				T	T	T	T	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	H	R	R	K	E	N	G	V	N	S	P	R	L	D	L	T	L	A	E	L	Q	E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R	L	K	F	L	K	Q	Q	D	Q	R	Q	Q	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	T	I	R	K	Q	V	E	N	I	T	R	Q	Y	Q	T	M	L	A	K	V	Q	S	Q	L	V	E	S	R	M	K	G	L	R	D	E	F	S	E	E	F	T	N	E	A	D	Q	L	E	Q	E	L	A	D	F	L	K	S	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.																		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	E	Q	E	K	L	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	I	A	E	S	Q	E	A	K	L	K	K	V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	E
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	H	F	D	K	C	S	A	L	S	S	R	S	V	S	P	E	D	A	Q	N	L	F	E	I	V	E	R	D	D	K	D	L	A	A	I	N	S	L	L	Q	D	A	A	I	D	V	A	S	F	V	R	K	V	N	M	L	L	D
Template Known Secondary structure											T	T	T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L	A	V	S	K	V	E	E	L	T	R	Q	L	E	M	L	K	N	G	R	I	D	G	H	H	D	N	Q	S	A	V	A	E	L	D	R	L	Y	K	E	L	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	D	A	D	K	A	K	M	Q	A	T	L	S	K	L	L	T	E	L	R	K	H	E	E	Y	I	S	V	F	E	G	I	S	A	L	I	Q	K	F	K	A	S	C	L	E	D	I	R	Q	T	R	N	L	L	D	F	Y	A	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	K	L	N	Q	E	Q	N	A	K	L	Q	Q	Q	R	E	C	L	N	K	R	N	S	E	V	A	V	M	D	K	R	V	S	E	L	R	D	R	L	W	K	K	K	A	A	L	Q	Q	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	R	S	Y	H	N	L	L	K	E	V	K	R	R	K	E	T	A	A	K	L	S	Q	I	L	K	S	C	E	T	Q	L	E	Q	I	N	T	A	D	L	R	E	R	Q	M	F	L	L	E	N	G
Template Known Secondary structure																																																				S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D