Job Description Q8CG79 Confidence 86.03% Date Tue Jul 30 13:24:09 BST 2013 Rank 360 Aligned Residues 259 % Identity 8% Template c4dvzA_ PDB info PDB header:oncoprotein Chain: A: PDB Molecule:cytotoxicity-associated immunodominant antigen; PDBTitle: crystal structure of the helicobacter pylori caga oncoprotein Resolution 3.19 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	P	G	E	N	D	C	H	L	A	E	V	W	C	G	S	E	R	P	V	A	D	N	E	R	M	F	D	V	L	Q	R	F	G	S	Q	R	N	E	V	R	F	F	L	R	H	E	R	P	P	N	R	D	I	V	S	G	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	R	R	N	L	E	N	K	L	T	A	K	G	L	S	L	Q	E	A	N	K	L	I	K	D	F	L	S	S	N	K	E	L	A	G	K	A	L	N	F	N	K	A	V	A	E	A	K	S	T	G	N	Y	D	E	V	K	K	A
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	D	P	S	V	K	R	N	G	V	K	V	P	G	E	H	R	R	K	E	N	G	V	N	S	P	R	L	D	L	T	L	A	E	L	Q	E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	D	L	E	K	S	L	R	K	R	E	H	L	E	K	E	V	E	K	K	L	E	S	K	S	G	N	K	K	A	Q	A	N	S	Q	K	D	E	I	F	A	L	I	N	K	E	A	N	R	D	A	R	A	I	A	Y	T	Q	N
Template Known Secondary structure																									T	T	T
Template Predicted Secondary structure
Template SS confidence
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		L	K	F	L	K	Q	Q	D	Q	R	Q	Q	.	Q	Q	A	A	E	Q	E	K	L	K	R	L	R	E	I	A	E	S	Q	E	A	K	L	K	K	V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	E	E	I
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		L	K	G	I	K	R	E	L	S	D	K	L	E	K	I	S	K	D	L	K	D	F	S	K	S	F	D	E	F	K	N	F	S	K	A	E	E	T	L	K	A	L	K	G	S	V	K	D	L	G	I	N	P	E	W	I	S	K	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L	A	V	S	K	V	E	E	L	T	R	Q	L	E	M	.	L	K	N	G	R	I	D	G	H	H	D	N	Q	S	A	V	A	E	L	D	R	L	Y	K	E	L	Q	L	R
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		N	L	N	A	A	L	N	E	F	K	N	G	D	F	S	K	V	T	Q	A	K	S	D	L	E	N	S	V	K	D	V	I	I	N	Q	K	V	T	D	K	V	D	N	L	N	Q	A	V	S	V	A	K	A	M	G	D	F	S	R	V
Template Known Secondary structure												T			T																																									T		T
Template Predicted Secondary structure
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	L	N	Q	E	Q	N	A	K	L	Q	Q	Q	R	E	C	L	N	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	V	L	A	D	L	K	N	F	S	K	E	Q	L	A	Q	Q	A	Q	K
Template Known Secondary structure																				T	T
Template Predicted Secondary structure
Template SS confidence
		809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D