Job Description Q8CG79 Confidence 49.78% Date Tue Jul 30 13:24:09 BST 2013 Rank 426 Aligned Residues 118 % Identity 25% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

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		973	.	.	.	.	.	.	980			.	.	.	.	.	.	.	.	.	990		.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.																						.
Predicted Secondary structure										.	.											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	V	K	F	L	V	Q	.	.	F	G	V	N	V	N	A	A	D	S	.	D	G	W	T	P	L	H	C	A	A	S	C	N	N	V	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C
Query Conservation										.	.											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.											.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P
Template Known Secondary structure													S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		1009	1010	.	.	.	.	.	.	.	.	.																																1020	.	.	.	.	.	.	.	.	.	1030	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		K	F	L	V	E	S	G	A	A	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	T	Y	S	D	M	Q	T	A	A	D	K	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V
Template Known Secondary structure																									S		B																T		S	B	G	G	G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
						1033	.	.	.	.	.	.	1040	.	.	.	.	.	.										.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.
Predicted Secondary structure		.	.	.	.															.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.															.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	C	E	E	M	E	E	G	Y	T	Q	C	S	Q	F	.	.	.	.	.	.	.	.	.	L	Y	G	V	Q	E	K	M	G	I	M	N	K	G	V	I	Y	A	L	W	D	Y	E	P	Q	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.															.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.															.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	L
Template Known Secondary structure			T	T	T	T	T		S	S	S	S													S							G	G	G							T	T	S		S						T	T		T					T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
					1072	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	H	D	D	E	L	L	M	K	E	G	D	C	M	T	V	I	R	R	E
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K
Template Known Secondary structure					B		T	T			S				B
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D