Job Description Q8CG79 Confidence 47.87% Date Tue Jul 30 13:24:09 BST 2013 Rank 433 Aligned Residues 209 % Identity 10% Template c2lemA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: monomeric mouse apoai(1-216) Resolution UNK

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	K	E	N	G	V	N	S	P	R	L	D	L	T	L	A	E	L	Q	E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R	L	K	F	L	K	Q	Q	D	Q	R	Q	Q	Q	Q	A	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	W	D	K	V	K	D	F	A	N	V	Y	V	D	A	V	K	D	S	G	R	D	Y	V	S	Q	F	E	S	S	S	L	G	Q	Q	L	N	L	N	L	L	E	N	W	D	T	L	G	S	T	V	S	Q	L	Q	E	R	L	G	P
Template Known Secondary structure																																												T	T	T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	K	L	K	R	L	R	E	I	A	E	S	Q	E	A	K	L	K	K	V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	E	E	I	E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	R	D	F	W	D	N	L	E	K	E	T	D	W	V	R	Q	E	M	N	K	D	L	E	E	V	K	Q	K	V	Q	P	Y	L	D	E	F	Q	K	K	W	K	E	D	V	E	L	Y	R	Q	K	A	S	P	Q	G	A	E	L
Template Known Secondary structure																																T	T	T	T																			T	S
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		S	K	V	E	E	L	T	R	Q	L	E	M	L	K	N	G	R	I	D	G	H	H	D	N	.	Q	S	A	V	A	E	L	D	R	L	Y	K	E	L	Q	L	R	N	K	L	N	Q	E	Q	N	A	K	L	Q	Q	Q	R	E	C	L
Query Conservation																										.
Alig confidence			.	.																						.
Template Conservation			.	.
Template Sequence		Q	.	.	E	S	A	R	Q	K	L	Q	E	L	Q	G	R	L	S	P	V	A	E	E	F	R	D	R	M	R	T	H	V	D	S	L	R	T	Q	L	A	P	H	S	E	Q	M	R	E	S	L	A	Q	R	L	A	E	L	K	S	N
Template Known Secondary structure			.	.						S			S	S			S		S	T
Template Predicted Secondary structure			.	.
Template SS confidence
		126			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	R	N	S	E	V	A	V	M	D	K	R	V	S	E	L	R	D	R	L	W	K	K	K	A	A	L	Q	Q	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	L	N	E	Y	H	S	S	A	K	S	H	L	K	S	L	G	E	K	A	R	P	A	L	E	D	L	R	H	S	L
Template Known Secondary structure											S	S	S								T	S		T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D