Job Description Q8CG79 Confidence 96.91% Date Tue Jul 30 13:24:09 BST 2013 Rank 311 Aligned Residues 244 % Identity 9% Template c1f5nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp. Resolution 1.70 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	Y	L	S	N	S	E	Q	H	F	T	E	V	P	V	T	P	E	T	I	C	R	D	V	V	D	L	C	K	E	P	G	E	N	D	C	H	L	A	E	V	W	C	G	S	E	R	P	V	A	D	N	E	R	M	F	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	Q	K	V	Q	L	P	T	E	S	L	Q	E	L	L	D	L	H	R	D	S	E	R	E	A	I	E	V	F	I	R	S	S	F	K	D	V	D	H	L	F	Q	K	E	L	A	A	Q	L	E	K	K	R	D	D	F	C	K	Q
Template Known Secondary structure								S	S		S	S																											G	G	G
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	R	F	G	S	Q	R	N	E	V	R	F	F	L	R	H	E	R	P	P	N	R	D	I	V	S	G	P	R	S	Q	D	P	S	V	K	R	N	G	V	K	V	P	G	E	H	R	R	K	E	N	G	V	N	S	P	R	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	E	A	S	S	D	R	C	S	G	L	L	Q	V	I	F	S	P	L	E	E	E	V	K	A	G	I	Y	S	K	P	G	G	Y	R	L	F	V	Q	K	L	Q	D	L	K	K	K	Y	Y	E	E	P	R	K	G	I	Q	A	E
Template Known Secondary structure																											T	T	T	T	S	S	T	T																			S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		L	T	L	A	E	L	Q	E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R	L	K	F	L	K	Q	Q	D	Q	R	Q	Q	.	Q	Q	A	A	E	Q	E	K	L	K	R	L	R	E	I	A	E
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		E	I	L	Q	T	Y	L	K	S	K	E	S	M	T	D	A	I	L	Q	T	D	Q	T	L	T	E	K	E	K	E	I	E	V	E	R	V	K	A	E	S	A	Q	A	S	A	K	M	L	H	E	M	Q	R	K	N	E	Q	M	M	E
Template Known Secondary structure											T												S	S	S
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	E	A	K	L	K	K	V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	E	E	I	E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L	A	V	S	K	V	E	E	L	T	R	Q	L	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	E	R	S	Y	Q	E	H	L	K	Q	L	T	E	K	M	E	N	D	R	V	Q	L	L	K	E	Q	E	R	T	L	A	L	K	L	Q	E	Q	E	Q	L	L	K	E	G	F	Q	K	E	S	R	I	M	K	N	E	I	Q	D
Template Known Secondary structure																																															T
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		245	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	N	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	T	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		579	580	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D