Job Description Q8CG79 Confidence 98.35% Date Tue Jul 30 13:24:09 BST 2013 Rank 289 Aligned Residues 310 % Identity 12% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	S	N	S	E	Q	H	F	T	E	V	P	V	T	P	E	T	I	C	R	D	V	V	D	L	C	K	E	P	G	E	N	D	C	H	L	A	E	V	W	C	G	S	E	R	P	V	A	D	N	E	R	M	F	D	V	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	S	D	I	E	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R	E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D
Template Known Secondary structure																																																										T	T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	S	Q	R	N	E	V	R	F	F	L	R	H	E	R	P	P	N	R	D	I	V	S	G	P	R	S	Q	D	P	S	V	K	R	N	G	V	K	V	P	G	E	H	R	R	K	E	N	G	V	N	S	P	R	L	D	L	T	L
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		A	A	D	I	T	R	Q	E	F	R	L	L	.	.	Q	A	E	L	R	E	Y	G	F	R	T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I
Template Known Secondary structure														.	.																																T	T		S	S	S
Template Predicted Secondary structure														.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		A	E	L	Q	E	M	A	S	R	Q	Q	Q	Q	I	E	A	Q	Q	Q	M	L	A	T	K	E	Q	R	L	K	F	L	K	Q	Q	D	Q	R	Q	Q	Q	Q	A	A	E	Q	E	K	L	.	.	K	R	L	R	E	I	A	E	S	Q
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		E	Q	A	E	K	R	Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L	E	K	N	G	G	A	A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	K	L	K	K	V	R	A	L	K	G	H	V	E	Q	K	R	L	S	N	G	K	L	V	E	E	I	E	Q	M	N	S	L	F	Q	Q	K	Q	R	E	L	V	L	A	V	S	K	V	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	N	D	R	A	I	S	E	A	R	N	K	L	S	S	V	T	E	S	L	N	T	A	R	N	A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S	T	N
Template Known Secondary structure																																									S	S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	I	V	V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N	D	R	N	P	V	V	T	E	D	V	E	G	D	K
Template Known Secondary structure								S		T	T	T		S																					T	S									T	S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
					236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	E	L	T	R	Q	L	E	M	L	K	N	G	R	I	D	G	H	H	D	N	Q	S	A	V	A	E	L	D	R	L	Y	K	E	L	Q	L	R	N	K	L	N	Q	E	Q	N	A	K	L	Q	Q	Q	R	E	C	L	N
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		K	I	Y	N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L	D	A	R	N	K	I	T	S	A	E	S	A	V	N	S	A	R	N	N	L	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	E	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	N	S	E	V	A	V	M	D	K	R	V	S	E	L	R	D	R	L	W	K	K	K	A	A	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	R	N	Q	L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D