Job Description Q6TXD4 Confidence 77.18% Date Tue Jul 30 13:06:16 BST 2013 Rank 298 Aligned Residues 167 % Identity 9% Template c3go5A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution Resolution 1.40 Å

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		25	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure								.	.																																																				.
Query SS confidence								.	.																																																				.
Query Sequence		V	G	D	V	I	E	.	.	V	L	A	V	V	D	E	F	W	L	L	G	K	K	E	D	V	T	G	Q	F	P	S	S	F	V	E	I	V	T	I	P	S	L	K	E	G	E	R	L	F	V	C	I	C	E	F	V	S	R	E	.
Query Conservation								.	.																																																				.
Alig confidence								.	.												.																	.	.	.	.	.	.																		.
Template Conservation																					.																	.	.	.	.	.	.
Template Sequence		L	A	S	F	I	V	G	L	I	I	D	E	N	D	R	F	Y	F	V	.	Q	K	D	G	Q	T	Y	A	L	A	K	E	E	G	Q	H	.	.	.	.	.	.	T	V	G	D	T	V	K	G	F	A	Y	T	D	X	K	Q	K	L
Template Known Secondary structure		T	T												S	S					.			T	T							G	G	G				.	.	.	.	.	.		T	T	S										T	T	S
Template Predicted Secondary structure																					.																	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
					82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																															.	.
Query SS confidence		.	.	.																															.	.
Query Sequence		.	.	.	L	N	S	L	S	L	H	R	G	D	L	V	I	L	D	D	S	A	P	T	A	G	W	L	Q	G	R	S	C	W	.	.	G	A	W	G	F	F	P	S	S	C	V	Q	E	L	C	L	S	S	R	S	R	R	W	H	A
Query Conservation		.	.	.																															.	.
Alig confidence		.	.	.																															.	.
Template Conservation
Template Sequence		R	L	T	T	L	E	V	T	A	T	Q	D	Q	F	G	W	G	R	V	T	E	V	R	K	D	L	G	V	F	V	D	T	G	L	P	D	K	E	I	V	V	S	L	D	I	L	P	E	L	K	E	L	W	P	K	K	G	D	Q	L
Template Known Secondary structure						S				S		S	S	S											T	T	T							S		T	T							G	G	G	S		S	S	G	G	G	S			T	T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.
Predicted Secondary structure																															.									.	.																	.
Query SS confidence																															.									.	.																	.
Query Sequence		Q	S	A	L	L	Q	A	P	E	Y	S	L	G	Q	A	R	A	L	M	G	L	S	A	Q	L	D	E	E	L	.	D	F	R	E	G	D	L	I	.	.	T	I	I	G	V	P	E	P	G	W	F	E	G	E	L	E	.	G	R	R
Query Conservation																															.									.	.																	.
Alig confidence																															.									.	.																	.
Template Conservation
Template Sequence		Y	I	R	L	E	V	D	K	K	D	R	I	W	G	L	L	A	Y	Q	E	D	F	Q	R	L	A	R	P	A	Y	N	N	X	Q	N	Q	N	W	P	A	I	V	Y	R	L	K	L	S	G	T	F	V	Y	L	P	E	N	N	X	L
Template Known Secondary structure									T	T	S																					S			T	T												T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		193	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	F	P	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	I	H	P	S
Template Known Secondary structure						G	G
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D