Job Description Q80TT8 Confidence 80.83% Date Wed Jul 10 14:12:26 BST 2013 Rank 106 Aligned Residues 383 % Identity 12% Template d1xm9a1 SCOP info alpha-alpha superhelix ARM repeat Plakophilin 1 helical region Resolution 2.80

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	V	L	A	T	V	Q	I	S	S	L	D	T	N	L	Q	L	S	G	L	C	A	L	S	Q	A	V	E	E	V	T	E	R	D	H	P	L	V	R	P	D	R	P	L	R	E	K	L	V	K	T	L	V	D	L	L	T	N
Query Conservation
Alig confidence											.	.																																	.	.	.	.	.	.
Template Conservation											.	.																																	.	.	.	.	.	.
Template Sequence		I	P	K	A	V	Q	Y	L	S	.	.	S	Q	D	E	K	Y	Q	A	I	G	A	Y	Y	I	Q	H	T	C	F	Q	D	E	S	A	K	Q	Q	V	Y	Q	L	G	.	.	.	.	.	.	G	I	C	K	L	V	D	L	L	R	S
Template Known Secondary structure											.	.	S	S		T														T	S	S		S	S								T	T	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure											.	.																																	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.							.	.	290	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Q	V	G	E	K	M	V	V	V	M	A	L	R	L	L	Y	L	L	M	T	K	H	E	.	W	R	P	L	F	A	R	E	G	G	I	Y	A	V	L	I	C	M	Q	E	Y	K	T	S	V	L	V	Q	Q	A	G	L	A	A	L	K
Query Conservation																									.
Alig confidence			.	.																					.																									.
Template Conservation			.	.																																														.
Template Sequence		P	.	.	N	Q	N	V	Q	Q	A	A	A	G	A	L	R	N	L	V	F	R	S	T	T	N	K	L	E	T	R	R	Q	N	G	I	R	E	A	V	S	L	L	R	R	T	G	N	A	.	E	I	Q	K	Q	L	T	G	L	L	W
Template Known Secondary structure		S	.	.																	S	S											T	T										T	T					.
Template Predicted Secondary structure			.	.																																														.
Template SS confidence
		299			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	A	I	A	N	S	S	D	V	P	T	F	I	P	S	R	D	S	I	Q	P	L	F	D	T	Q	M	T	R	E	I	F	A	S	I	D	S	A	T	R	P	G	S	E	S	L	L	L	S	V	P	A	A	V	V	L	M	L	N
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		N	L	S	S	T	D	E	L	K	E	E	L	I	A	D	A	L	P	V	.	.	.	.	.	.	.	.	.	L	A	D	R	V	I	I	P	F	S	G	W	C	V	V	D	P	E	V	F	F	N	A	T	G	C	L	R	N	L	S	S
Template Known Secondary structure					T	S	S	S	T												.	.	.	.	.	.	.	.	.					T	T					T																				T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.										.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		T	E	G	C	S	S	A	V	R	N	G	.	.	.	.	.	L	L	L	L	N	L	L	L	C	N	H	H	T	L	G	D	Q	I	I	T	Q	E	L	R	D	T	L	F	R	H	S	G	I	A	P	G	T	E	P	M	P	T	T	R
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.
Template Conservation
Template Sequence		A	D	A	G	R	Q	T	M	R	N	Y	S	G	L	I	D	S	L	M	A	Y	V	Q	N	C	V	A	A	S	R	C	D	D	K	S	V	E	N	C	M	C	V	L	H	N	L	S	Y	R	L	D	A	E	V	P	T	R	Y	R	Q
Template Known Secondary structure		S								T	T	S	T	T																T		T	T		T	T												T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	L	T	M	L	L	S	R	Y	S	E	P	R	G	S	P	E	R	A	V	L	E	T	P	S	T	Q	G	Q	D	G	S	P	E	S	L	I	R	S	L	V	G	D	L	S	A	E	L	F	L	D	L	E	R	V	L	C	H	E
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		L	E	Y	N	A	L	P	E	E	E	T	N	P	K	G	S	G	.	.	.	.	.	.	.	.	.	W	L	Y	H	S	D	A	I	R	T	Y	L	N	L	M	G	K	S	K	K	D	A	T	L	E	A	C	A	G	A	L	Q	N	L
Template Known Secondary structure					T							S	S			G	G	G	.	.	.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.										.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	P	A	A	V	R	P	L	L	R	R	L	Q	Q	E	T	Q	P	F	L	L	L	L	R	T	L	D	A	P	G	P	N	R	T	L	L	L	T	I	L	R	V	M	T	R	L	L	D	H	P	E	T	M	V	L	P	W	H
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		T	A	S	K	G	L	M	S	S	G	M	S	Q	L	I	G	L	K	E	K	G	L	P	Q	I	A	R	L	L	Q	S	.	G	N	S	D	V	V	R	S	G	A	S	L	L	S	N	M	S	R	H	P	L	L	H	R	V	M	G	N
Template Known Secondary structure		T	T		S	S	S											T	T	S										T	T		.	S																	T	S	G	G	G
Template Predicted Secondary structure																																	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.		.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.					.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		E	V	L	E	P	C	L	N	C	L	N	G	P	S	S	.	.	.	.	D	S	E	V	V	Q	E	V	T	C	F	L	H	R	L	A	L	M	Q	K	D	Y	A	V	V	L	C	C	L	G	G	K	E	A	L	S	K	V	L	D	K
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		Q	V	F	P	E	V	T	R	L	L	T	S	H	T	G	N	T	S	N	S	E	D	I	L	S	S	A	C	Y	T	V	R	N	L	M	A	S	Q	P	Q	L	A	K	Q	Y	F	S	S	S	M	L	N	N	I	I	N	L	C	R	S
Template Known Secondary structure			T							T	T	T	S			S		S	T	T																	T	T		T
Template Predicted Secondary structure
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		428	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	S
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		674	.	.