Job Description Q80TT8 Confidence 99.96% Date Wed Jul 10 14:12:26 BST 2013 Rank 5 Aligned Residues 195 % Identity 24% Template c4k95G_ PDB info PDB header:ligase Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin; PDBTitle: crystal structure of parkin Resolution 6.50 Å Model Dimensions (Å) X:69.583 Y:71.312 Z:45.599

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		1404	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450								.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		T	R	P	D	Q	C	P	V	C	V	T	P	L	G	P	H	D	D	S	P	S	L	C	C	L	H	C	C	C	K	S	C	W	N	E	Y	L	T	T	R	I	E	Q	N	F	V	L	.	.	.	.	.	.	.	N	C	T	C	P	I
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence														.																																			.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		S	R	S	I	P	C	I	A	C	T	D	V	.	R	N	P	V	L	V	F	Q	C	N	H	R	H	V	I	C	L	D	C	F	H	L	Y	C	V	T	R	L	N	D	R	Q	F	V	H	D	A	Q	L	G	Y	S	L	P	C	V	A
Template Known Secondary structure		T	T					T	T	T				.		S	S						S	S	S		B																	T	T						S	S	S							T	T
Template Predicted Secondary structure														.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		1457	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	C	P	A	Q	P	T	G	A	F	I	R	N	I	V	S	S	P	E	V	I	S	K	Y	E	K	A	L	L	R	G	Y	V	E	S	C	S	N	L	T	W	C	T	N	P	Q	G	C	D	R	I	L	C	R	Q	G	L	G	S
Query Conservation
Alig confidence																					.																					.
Template Conservation																					.																					.
Template Sequence		G	C	P	N	S	L	I	K	E	L	H	H	F	R	I	L	G	E	E	.	Q	Y	N	R	Y	Q	Q	Y	G	A	E	E	C	V	L	Q	M	G	G	V	.	L	C	P	R	P	G	C	G	A	G	L	L	P	E	Q	G	Q	R	K
Template Known Secondary structure				S	S						G	G	G	G	G	G	G				.							T										T	T			.			S		T	T	T							S	S			S
Template Predicted Secondary structure																					.																					.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		1517					.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		G	.	.	.	.	T	T	C	S	K	C	G	W	A	S	C	F	S	C	S	F	P	E	A	H	Y	P	A	S	C	G	H	M	S	Q	W	V	D	D	G	G	Y	Y	D	G	M	S	V	E	A	Q	S	K	H	L	A	K	L	I	S
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.															.						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	C	E	G	G	N	G	L	G	C	G	F	V	F	C	R	D	C	.	K	E	A	Y	H	.	E	G	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	V	D	Q	R	A	A	E	Q	A	R	W	E	T	T
Template Known Secondary structure							T	T	S									T	T	T	.		S	B			.	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.												B
Template Predicted Secondary structure																					.						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.		.	.	.	.															.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		1573	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.			.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.			.	.	.	.	.	.
Predicted Secondary structure																									.	.																	.	.
Query SS confidence																									.	.																	.	.
Query Sequence		K	R	C	P	S	C	Q	A	P	I	E	K	N	E	G	C	L	H	M	T	C	A	R	.	.	C	N	H	G	F	C	W	R	C	L	K	S	W	K	P	S	.	.	H	K	D	Y	Y	N
Query Conservation																									.	.																	.	.
Alig confidence																									.	.																	.	.
Template Conservation
Template Sequence		K	P	C	P	R	C	N	V	P	I	E	K	N	G	G	C	M	H	M	K	C	P	Q	P	Q	C	K	L	E	W	C	W	N	C	G	C	E	W	N	R	A	C	M	G	D	H	W	F	D
Template Known Secondary structure					T	T	T								T	T	B								T	T	T						T	T	T		S	B										S	B
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D