Job Description Q80TT8 Confidence 34.89% Date Wed Jul 10 14:12:26 BST 2013 Rank 185 Aligned Residues 113 % Identity 19% Template c4ifqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup192; PDBTitle: crystal structure of saccharomyces cerevisiae nup192, residues 2 to2 960 [scnup192(2-960)] Resolution 3.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.					.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		L	L	L	T	I	L	R	V	M	T	R	L	L	D	H	P	E	T	M	V	L	P	W	H	E	V	L	E	.	.	.	.	P	C	L	N	C	L	N	G	P	S	S	D	S	E	V	V	Q	E	V	T	C	F	L	H	R	L	A	L
Query Conservation																														.	.	.	.
Alig confidence																														.	.	.	.														.
Template Conservation																																															.
Template Sequence		V	Q	L	P	I	L	K	I	I	Y	T	G	L	C	S	F	D	Y	S	V	I	L	N	N	F	F	N	Y	V	Q	E	C	P	A	I	P	I	F	N	Y	I	F	T	E	K	.	I	Y	K	S	I	F	N	V	V	D	V	G	V	D
Template Known Secondary structure																S	S		T															T									T	S			.											S
Template Predicted Secondary structure																																															.
Template SS confidence
		776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820		.	.	.	.	.	.	.	.	.	830	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	K	D	Y	A	V	V	L	C	C	L	G	G	K	E	A	L	S	K	V	L	D	K	H	S	T	Q	L	L	L	A	S	E	L	R	H	L	V	A	E	C	E	K	Y	S	Q	L	C	S	N	L	T	S	S	I	L	A	G	C
Query Conservation
Alig confidence									.	.																			.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																			.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	K	N	Q	A	E	.	.	L	L	Q	L	A	V	K	I	I	N	K	V	L	D	Y	Q	E	T	.	.	.	Y	V	E	E	L	F	P	I	V	K	K	H	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T				.	.																			.	.	.				T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																			.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		857	.	.	860	.	.	.			.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.				.	.	.	.	.	.	.	.	890	.	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.							.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		I	Q	M	V	L	G	Q	I	E	D	H	R	R	T	Y	K	P	I	T	I	.	.	.	.	.	.	P	F	F	D	V	F	L	R	H	L
Query Conservation																						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	T	D	Y	F	L	P	K	N	Y	S	L	H	G	L	R	S	F	Y	D	A	I	F	F	N	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T	B				T	T														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													896	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D