 |
| Job Description | Q80TT8 | | Confidence | 76.44% | Date | Wed Jul 10 14:12:26 BST 2013 |
| Rank | 115 | Aligned Residues | 54 |
| % Identity | 26% | Template | c3zyiB_ |
| PDB info |
PDB header:cell adhesion | Chain: B: PDB Molecule:netrin-g2; |
PDBTitle: netring2 in complex with ngl2
|
| Resolution | 2.60 Å |
|
 |
|   |   |
517 | . | . | 520 | . | . | . | . | |
|
|
. | . | . | . | . | 530 | . | . | . | |
. | . | . | . | . | . | 540 | |
|
|
|
. | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|  |  |
|
| . |
|
|
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
H | R | A | S | K | L | T | D | . |
. |
. |
R | N | P | K | T | Y | W | E | S | . |
N | G | S | T | G | S | H | . |
. |
. |
. |
S | I | T | L | H | M | H | R | G | V | L | I | R | Q | L | T | L | L | V | A | S | E | D | S | S | Y | M | P |
| Query Conservation |   |
|
|
|
|
|
|
|
| . | . | . |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
| Template Conservation |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |
|
|   |   |
|   | . | . | . |
|   |
|
|
| Template Sequence |   |
H | P | P | R | L | M | F | D | K | E | E | E | G | L | A | T | Y | W | Q | S | I | T | W | S | R | Y | P | S | P | L | E | A | N | I | T | L | S | W | N | K | T | V | E | L | T | D | D | V | V | M | T | F | E | . |
. |
. |
Y | G | R | P |
| Template Known Secondary structure |   |
|
| G | G | G | G | T | S |
|
|
| T | T |
|
|
|
|  |  | B |
|
| S | T | T | T | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  | S | . | . | . | S |
|
|
|
| Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | |
|
|
. | . | . | . |
|   |
|   |   |
569 | 570 | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
| Query Sequence |   |
A | R | V | V | V |
| Query Conservation |   |
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
| Template Conservation |   |
  |
|
|   |
|
| Template Sequence |   |
T | V | M | V | L |
| Template Known Secondary structure |   |
S |  |  |  |  |
| Template Predicted Secondary structure |   |
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|   |   |
147 | . | . | 150 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|