Job Description Q80TT8 Confidence 92.64% Date Wed Jul 10 14:12:26 BST 2013 Rank 64 Aligned Residues 333 % Identity 15% Template c3l6yA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:catenin delta-1; PDBTitle: crystal structure of p120 catenin in complex with e-cadherin Resolution 3.00 Å Model Dimensions (Å) X:79.482 Y:52.863 Z:44.194

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		P	D	R	P	L	R	E	K	L	V	K	T	L	V	D	L	L	T	N	Q	V	G	E	K	M	V	V	V	M	A	L	R	L	L	Y	L	L	.	M	T	K	H	E	W	R	P	L	F	A	R	E	G	G	I	Y	A	V	L	I	C
Query Conservation																																							.
Alig confidence																						.	.																.
Template Conservation																						.	.
Template Sequence		P	P	P	N	W	R	Q	P	E	L	P	E	V	I	A	M	L	G	F	R	.	.	L	D	A	V	K	S	N	A	A	A	Y	L	Q	H	L	C	Y	R	N	D	K	V	K	T	D	V	R	K	L	K	G	I	P	V	L	V	G	L
Template Known Secondary structure																		T	T		S	.	.																	T	T											T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	E	Y	K	T	S	V	L	V	Q	Q	A	G	L	A	A	L	K	M	L	A	I	A	N	S	S	D	V	P	T	F	I	P	S	R	D	S	I	Q	P	L	F	D	T	Q	M	T	R	E	I	F	A	S	I	D	S	A	T	R
Query Conservation
Alig confidence					.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	H	.	.	P	K	K	E	V	H	L	G	A	C	G	A	L	K	N	I	S	F	G	R	D	Q	D	N	K	I	A	I	K	N	C	D	G	V	P	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T		.	.	S	S															T	S	S	S											T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		417	.	.			420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	S	E	S	L	L	L	S	V	P	A	A	V	V	L	M	L	N	T	E	G	C	S	S	A	V	R	N	G	L	L	L	L	N	L	L	L	C	N	H	H	T	L	G	D	Q	I	I	T	Q	E	L	R	D	T	L	F	R	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	L	R	K	A	R	D	M	D	L	T	E	V	I	T	G	T	L	W	N	L	S	S	H	D	S	I	K	M	E	I	V	D	H	A	L	H	A	L	T	D	E	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S																T	S																			.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
																		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	A	P	G	T	E	P	M	P	T	T	R	T	I	L	T	M	L	L	S	R	Y	S	E	P	R	G	S	P	E	R	A	V	L	E	T	P	S	T	Q	G	Q	D	G	S	P	E	S	L	I	R	S	L	V	G	D	L	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	I	P	H	S	G	W	E	R	E	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					501	.	.	.	.	.	.	.	.	510	.	.	.																										.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		A	E	L	F	L	D	L	E	R	V	L	C	H	E	G	S	P	P	A	A	V	R	P	L	L	R	R	L	Q	Q	E	T	Q	P	F	L	L	L	L	R	.	T	L	D	A	P	G	P	N	R	T	L	L	L	T	I	L	R	V	M
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		E	S	V	L	T	N	T	A	G	C	L	R	N	V	S	S	E	R	S	E	A	R	R	K	L	R	E	C	D	G	L	V	D	A	L	I	F	I	V	Q	A	E	I	G	Q	K	D	S	D	S	K	L	V	E	N	C	V	C	L	L
Template Known Secondary structure																T	S	S										T	S	T	T														T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		357	.	.	360	.	.	.	.	.													.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Query Sequence		T	R	L	L	D	H	P	E	T	.	.	.	.	.	.	.	.	.	.	.	.	M	V	L	P	W	H	E	V	L	E	P	C	L	N	C	L	N	G	P	S	S	D	S	E	V	V	Q	E	V	T	C	F	L	H	R	L	A	L	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation
Template Sequence		R	N	L	S	Y	Q	V	H	R	E	I	P	Q	A	E	R	S	P	A	R	G	Y	E	L	L	F	Q	P	E	V	V	R	I	Y	I	S	L	L	K	E	S	K	T	P	A	I	L	E	A	S	A	G	A	I	Q	N	L	C	A	G
Template Known Secondary structure						T	T					S	T	T								G	G	G	G	G	G	S																																	S
Template Predicted Secondary structure
Template SS confidence
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
					404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.			.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																	.	.
Query SS confidence		.	.	.																																	.	.
Query Sequence		.	.	.	M	Q	K	D	Y	A	V	V	L	C	C	L	G	G	K	E	A	L	S	K	V	L	D	K	H	S	T	Q	L	L	L	A	.	.	S	E	L	R	H	L	V	A	E	C	E	K	Y	S	Q	L	C	S	N	L	T	S	S
Query Conservation		.	.	.																																	.	.
Alig confidence		.	.	.																																	.	.
Template Conservation
Template Sequence		R	W	T	Y	G	R	Y	I	R	S	A	L	R	Q	E	K	A	L	S	A	I	A	D	L	L	T	N	E	H	E	R	V	V	K	A	A	S	G	A	L	R	N	L	A	V	D	A	R	N	K	E	L	I	G	K	H	A	I	P	N
Template Known Secondary structure			S											T	S										G	G	G		S																	T	T		S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	G	C	I	Q	M	V	L	G	Q	I	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	E	D	T	V	I	S	I	L	N	T	I	N	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.