Job Description Q80TT8 Confidence 91.33% Date Wed Jul 10 14:12:26 BST 2013 Rank 80 Aligned Residues 57 % Identity 19% Template c3knvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of the ring and first zinc finger domains2 of traf2 Resolution 1.90 Å

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		1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	G	L	R	V	P	Q	A	Q	V	V	P	T	R	P	D	Q	C	P	V	C	V	T	P	L	G	P	H	D	D	S	P	S	L	C	C	L	H	C	C	C	K	S	C	W	N	E	Y	L	T	T	R	I	E	Q	N	F	V
Query Conservation
Alig confidence																													.	.	.																									.	.	.	.	.	.
Template Conservation																													.	.	.																									.	.	.	.	.	.
Template Sequence		L	Q	P	G	F	S	K	T	L	L	G	T	K	L	E	A	K	Y	L	C	S	A	C	R	N	V	L	.	.	.	R	R	P	F	Q	A	Q	C	G	H	R	Y	C	S	F	C	L	A	S	I	L	S	S	G	.	.	.	.	.	.
Template Known Secondary structure					S	B		G	G	G	T	G	G	G			G	G	G	B		T	T	T		S	B		.	.	.	S	S					T	T	S												G	G	G	S	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.																									.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		1450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	C	T	C	P	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	P	Q	N	C	A	A
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			66	.	.	.	70	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D