Job Description Q80TT8 Confidence 21.80% Date Wed Jul 10 14:12:26 BST 2013 Rank 276 Aligned Residues 324 % Identity 17% Template c3gq2B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain Resolution 2.18 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		E	K	L	V	K	T	L	V	D	L	L	T	N	.	.	.	.	Q	V	G	E	K	M	V	V	V	M	A	L	R	L	L	Y	L	L	M	T	K	H	E	W	R	P	L	F	A	R	E	G	G	I	Y	A	V	L	I	C	M	Q	E
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.		.	.													.	.	.	.	.										.
Template Conservation																				.	.													.	.	.	.	.										.
Template Sequence		A	E	T	I	Q	K	L	C	D	R	V	A	S	S	T	L	L	D	.	.	D	R	R	N	A	V	R	A	L	K	S	L	.	.	.	.	.	S	K	K	Y	R	L	E	V	G	.	I	Q	A	M	E	H	L	I	H	V	L	Q	T
Template Known Secondary structure		T																		.	.													.	.	.	.	.				T						.
Template Predicted Secondary structure																				.	.													.	.	.	.	.										.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.										.	.	.	.
Predicted Secondary structure																											.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		Y	K	T	S	V	L	V	Q	Q	A	G	L	A	A	L	K	M	L	A	I	A	N	S	S	D	.	.	.	.	.	V	P	T	F	I	P	S	R	D	S	I	Q	P	L	F	D	T	.	.	.	.	.	.	.	.	.	Q	M	T	R
Query Conservation																											.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	S	D	S	E	I	I	G	Y	A	L	D	T	L	Y	N	I	I	S	N	D	E	E	D	L	G	S	Q	F	T	E	I	F	I	K	Q	Q	E	N	V	T	L	L	L	S	L	L	E	E	F	D	F	H	V	R	W	P	G	V
Template Known Secondary structure			T	T																			S														S	S	T											T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		E	I	F	A	S	I	D	S	A	T	R	P	G	S	E	S	L	L	L	S	V	P	A	A	V	V	L	M	L	N	T	E	G	C	.	S	S	A	V	R	N	G	L	L	L	L	N	L	L	L	C	N	H	H	T	L	G	D	Q	I
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		K	L	L	T	S	L	L	K	Q	L	G	P	Q	V	Q	Q	I	I	L	V	S	P	M	G	V	S	R	L	M	D	L	L	A	D	S	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	R	S	N	G	A	I	Q	K	I
Template Known Secondary structure											S											S	T	T							G	G	G	T		S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		226	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		I	T	Q	.	E	L	R	D	T	L	F	R	H	S	G	I	A	P	G	T	E	P	M	P	T	T	R	T	I	L	T	M	L	L	S	R	Y	S	E	P	R	G	S	P	E	R	A	V	L	E	T	P	S	T	Q	G	Q	D	G	S
Query Conservation					.
Alig confidence					.																												.																				.	.	.	.	.	.	.
Template Conservation																																	.																				.	.	.	.	.	.	.
Template Sequence		V	A	F	E	N	A	F	E	R	L	L	D	I	I	T	E	E	G	N	S	D	G	G	I	V	V	E	D	C	L	I	.	L	L	Q	N	L	L	K	N	N	N	S	N	Q	N	F	F	K	E	G	.	.	.	.	.	.	.	S	Y
Template Known Secondary structure					T	T												T	T	G	G	G	S										.							T	T											T	.	.	.	.	.	.	.	T	G
Template Predicted Secondary structure																																	.																				.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.								.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.												.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		P	E	S	L	I	R	S	L	V	G	D	L	S	.	.	.	.	.	.	.	.	.	.	.	A	E	L	F	L	D	L	E	R	V	L	C	H	E	G	S	P	P	A	A	V	R	P	L	L	R	R	L	Q	Q	E	.	.	T	Q	P
Query Conservation															.	.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation
Template Sequence		I	Q	R	M	K	P	W	F	E	V	G	D	E	N	S	G	W	S	A	Q	K	V	T	N	L	H	L	M	L	Q	L	V	R	V	L	V	S	P	N	N	P	P	G	A	T	S	S	C	Q	K	A	M	F	Q	C	G	L	L	Q	Q
Template Known Secondary structure		G	G	G	G	G	G	G	G	S			S	S																							T		T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.								.	.	.	370	.	.				.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																					.	.	.	.	.	.	.							.	.	.
Query SS confidence																																					.	.	.	.	.	.	.							.	.	.
Query Sequence		F	L	L	L	L	R	T	L	D	A	P	G	P	N	R	T	L	L	L	T	I	L	R	V	M	T	R	L	L	D	H	P	E	T	M	.	.	.	.	.	.	.	V	L	P	W	H	E	.	.	.	V	L	E	P	C	L	N	C	L
Query Conservation																																					.	.	.	.	.	.	.							.	.	.
Alig confidence		.	.	.																																	.	.	.	.	.	.	.							.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	C	T	I	L	M	A	T	G	V	P	A	D	I	L	T	E	T	I	N	T	V	S	E	V	I	R	G	C	Q	V	N	Q	D	Y	F	A	S	V	N	A	P	S	N	P	P	R	P	A	I	V	V	L	L	M	S	M
Template Known Secondary structure		.	.	.					T	T		S	S																		T	T												B			S	S	S			B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	P	S	S	D	S	E	V	V	Q	E	V	T	C	F	L	H	R	L	A	L	M	Q	K	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	E	R	Q	P	F	V	L	R	C	A	V	L	Y	C	F	Q	C	F	L	Y	K	N	Q	K
Template Known Secondary structure		T		T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D