Job Description Q80TT8 Confidence 80.90% Date Wed Jul 10 14:12:26 BST 2013 Rank 105 Aligned Residues 177 % Identity 23% Template c2wzkA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cullin-5; PDBTitle: structure of the cul5 n-terminal domain at 2.05a resolution. Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		L	F	R	E	Q	L	C	R	R	T	C	L	F	Y	T	I	R	A	Q	A	W	S	R	D	I	A	E	D	R	Q	R	L	L	Q	L	Y	P	R	L	N	R	V	L	R	H	E	Q	N	F	A	D	R	F	L	P	.	.	.	D	D
Query Conservation																																																									.	.	.
Alig confidence																										.	.	.	.	.																											.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		N	F	E	K	A	Y	L	D	S	T	E	R	F	Y	R	T	Q	A	P	S	Y	L	Q	Q	.	.	.	.	.	N	G	V	Q	N	Y	M	K	Y	A	D	A	K	L	K	E	E	E	K	R	A	L	R	Y	L	E	T	R	R	E	C
Template Known Secondary structure		T																								.	.	.	.	.																									S			T	T
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	Q	A	L	G	K	T	C	W	E	A	L	V	S	P	L	V	Q	N	I	T	S	P	D	A	G	G	V	S	S	L	G	W	L	L	D	Q	Y	L	E	H	R	E	S	T	R	S	R	Q	G	P	A	A	S	F	A	S	Q
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	V	E	A	L	M	E	C	C	V	N	A	L	V	T	S	F	K	E	T	I	L	A	E	.	.	.	.	.	.	.	.	.	.	.	C	Q	G	M	I	K	R	N	E	T	E	K	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S														T	G	G	G						T	T	.	.	.	.	.	.	.	.	.	.	.							T	T					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	R	L	C	H	L	L	V	H	V	E	A	P	P	G	P	S	P	E	P	S	S	Q	P	L	S	K	N	S	K	G	Q	D	G	S	P	T	P	A	P	T	P	V	C	P	S	T	S	L	R	N	L	T	Q	C	W	L	S	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	L	M	F	S	L	M	D	K	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	E	P	M	L	K	D	L	E	E	H
Template Known Secondary structure										T	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.																																				.	.	.	.	.	310	.	.	.	.	.	.	.
		819	820	.	.	.	.	.	.	.	.	.	830	.	.	.						.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		V	Q	G	Q	V	S	R	F	L	A	A	A	W	R	A	.	.	.	.	.	S	D	F	V	P	R	Y	C	S	L	Y	Q	R	L	Q	S	A	G	S	E	L	F	G	P	R	A	A	F	T	L	A	L	R	S	G	F	S	G	A	L
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		I	I	S	A	G	L	A	D	M	V	A	A	A	E	T	I	T	T	D	S	E	K	Y	R	E	Q	L	D	T	L	F	N	R	F	S	K	L	V	K	E	A	F	Q	D	D	P	R	F	L	T	A	R	D	K	A	Y	K	A	V	V
Template Known Secondary structure														G	G	G	T	T	T																									T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		874	.	.	.	.	.	880	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	S	F	L	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	A	T	I	F	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D