Job Description Q80TT8 Confidence 59.28% Date Wed Jul 10 14:12:26 BST 2013 Rank 137 Aligned Residues 62 % Identity 11% Template c2orxA_ PDB info PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:neuropilin-1; PDBTitle: structural basis for ligand binding and heparin mediated activation of2 neuropilin Resolution 2.40 Å

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		510	.	.	.	.				.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		V	E	V	S	S	.	.	.	N	P	H	R	A	S	K	L	T	D	R	N	P	K	T	Y	W	E	S	N	G	S	T	G	S	H	S	I	T	L	H	M	H	R	G	V	L	I	R	Q	L	T	L	L	V	A	S	E	D	S	S	Y
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence		I	T	A	S	S	Q	Y	G	T	N	W	S	V	E	R	S	R	L	N	Y	P	E	N	G	W	T	P	G	E	D	S	Y	R	E	W	I	Q	V	D	L	G	L	L	R	F	V	T	A	V	G	T	Q	G	A	I	S	K	E	T	K
Template Known Secondary structure					S				S	G	G	G		G	G	G		B	T	T		S	S			B			S	S			T	T																								T	T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		567	.	.	570	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	A	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	Y	Y	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D