Job Description Q80TT8 Confidence 99.93% Date Wed Jul 10 14:12:26 BST 2013 Rank 7 Aligned Residues 345 % Identity 21% Template c1ldkB_ PDB info PDB header:ligase Chain: B: PDB Molecule:cullin homolog; PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex Resolution 3.10 Å Model Dimensions (Å) X:84.056 Y:59.848 Z:52.610

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		880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	H	I	S	E	Q	F	A	R	H	I	D	Q	Q	I	H	G	G	L	L	G	G	A	A	G	V	G	M	L	G	R	L	Q	R	H	L	E	P	I	M	V	L	S	G	L	E	L	A	T	T	F	E	H	F	Y	Q	H	Y
Query Conservation
Alig confidence																				.																															.	.	.
Template Conservation																				.																															.	.	.
Template Sequence		S	S	S	K	S	P	E	L	L	A	R	Y	C	D	S	L	L	K	.	K	S	S	K	N	P	E	E	A	E	L	E	D	T	L	N	Q	V	M	V	V	F	K	Y	I	E	D	K	D	V	.	.	.	F	Q	K	F	Y	A	K	M
Template Known Secondary structure			S	S															S	.			S	S																			T	T		T	T	T	T		.	.	.
Template Predicted Secondary structure																				.																															.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.				.	.	.	.	.	.	.	.
		940	.	.	.	.	.	.	.	.	.	950	.			.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.				970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.
Predicted Secondary structure														.	.																			.	.	.
Query SS confidence														.	.																			.	.	.
Query Sequence		M	A	D	R	L	L	S	L	G	S	S	W	.	.	L	E	G	A	V	L	E	Q	I	G	P	C	F	P	N	R	L	P	.	.	.	Q	L	M	L	Q	S	L	H	T	S	E	E	L	Q	H	R	F	H	L	F	Q	L	Q	Q	L
Query Conservation														.	.																			.	.	.
Alig confidence														.	.																			.	.	.																									.
Template Conservation																																																													.
Template Sequence		L	A	K	R	L	V	H	Q	N	S	A	S	D	D	A	E	A	S	M	I	S	K	L	K	Q	A	C	G	F	E	Y	T	S	K	L	Q	R	M	F	Q	D	I	G	V	S	K	D	L	N	E	Q	F	K	K	H	L	T	N	S	.
Template Known Secondary structure								S				S														T	T	S		S	S																												T	T	.
Template Predicted Secondary structure																																																													.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		995	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	Q	L	L	E	Q	G	D	Q	E	E	W	R	P	E	K	V	E	E	D	D	E	G	Q	E	T	G	R	E	L	F	T	D	P	G	P	A	I	S	V	L	V	L	S	P	R	C	W	P	V	S	P	L	C	Y	L	H	H	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	L	D	L	D	F	S	I	Q	V	L	S	S	G	S	W	P	F	Q	Q	S	C	T	F	A	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S									T	T	T							S				.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
																																		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
		1055	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.		.	.	.	.	.	1100	.	.					.	.	.	.	.	.	.
Predicted Secondary structure																																										.									.	.	.	.
Query SS confidence																																										.									.	.	.	.
Query Sequence		R	K	H	L	Q	A	E	L	C	D	A	L	E	R	F	S	S	F	Y	S	H	S	Q	N	C	P	V	L	D	I	G	P	H	R	R	L	Q	W	T	W	.	L	G	R	A	E	L	Q	L	.	.	.	.	G	D	Q	T	L	H	V
Query Conservation																																										.									.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.									.									.	.	.	.
Template Conservation		.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		.	.	.	L	P	S	E	L	E	R	S	Y	Q	R	F	T	A	F	Y	A	S	R	H	S	.	.	.	.	.	.	.	.	G	R	K	L	T	W	L	Y	Q	L	S	K	G	E	L	V	T	N	C	F	K	N	R	Y	T	L	Q	A
Template Known Secondary structure		.	.	.			S	S	S	T	T	T										T	T		T	.	.	.	.	.	.	.	.	T							S	S	S								T	T	S	S	S
Template Predicted Secondary structure		.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
					555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.									.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		S	L	N	T	V	Q	M	W	L	L	F	N	Q	S	E	E	V	S	V	E	T	L	L	R	N	S	D	L	S	P	E	L	L	H	Q	A	L	L	P	L	T	S	D	N	G	P	L	T	L	E	E	T	Q	D	Y	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.
Alig confidence																																													.												.	.	.	.	.
Template Conservation																																													.
Template Sequence		S	T	F	Q	M	A	I	L	L	Q	Y	N	T	E	D	A	Y	T	V	Q	Q	L	T	D	S	T	Q	I	K	M	D	I	L	A	Q	V	L	Q	I	L	L	K	S	.	K	L	L	V	L	E	D	E	N	A	N	V	D	E	V	E
Template Known Secondary structure									T	T	T	T	S	S	S	S									T	T	T	T																T	.	T	S	S			S	S	S				T	T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
				1165	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180		.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.
Predicted Secondary structure		.	.																	.
Query SS confidence		.	.																	.
Query Sequence		.	.	P	Q	G	G	V	L	R	L	R	E	P	R	S	Q	T	H	.	E	E	F	L	W	L	I	P	P	Q	T	Y	L	S	V	E	K	D	E	G	R	T	L	E	Q	K	R	N	L	L	S	C	L	L	V	R	I	L	K	A	H
Query Conservation		.	.																	.
Alig confidence		.	.																	.
Template Conservation
Template Sequence		L	K	P	D	T	L	I	K	L	Y	L	G	Y	K	N	K	K	L	R	V	N	I	N	V	P	M	K	T	E	Q	K	Q	E	Q	E	T	T	H	K	N	I	E	E	D	R	K	L	L	I	Q	A	A	I	V	R	I	M	K	M	R
Template Known Secondary structure				T	T	S						S	S				S	S	S	S								S	T											T										T	S	S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	K	G	L	H	I	D	Q	L	V	C	L	V	L	E	A	W	Q	K	G	P	D	P	P	G	R	L	G	N	A	A	A	V	G	V	A	C	S	S	T	D	V	L	S	C	I	L	H	L	L	G	Q	G	Y	V	E	R	R	D
Query Conservation
Alig confidence				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	.	.	L	K	H	Q	Q	L	L	G	E	V	L	T	Q	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	F	K	P	R	V	P	V	I	K	K	C	I	D	I	L	I	E	K	E	Y	L	E	R	V	D
Template Known Secondary structure		S	S	.	.		B					T	T	T	T	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					S	S	T	T	S	S	T					G	G	G	T						T
Template Predicted Secondary structure				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		723	.			.	.	.	.	.	730	.	.	.	.	.	.	.	.	.															740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
		1282	.	.	.	.	.	.	.	1290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	P	Q	V	L	M	Y	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	K	D	T	Y	S	Y	L	A
Template Known Secondary structure		T		S	S	B
Template Predicted Secondary structure
Template SS confidence
		767	.	.	770	.	.	.	.	.	.