Job Description P35235 Confidence 100.00% Date Wed Jul 10 14:25:20 BST 2013 Rank 7 Aligned Residues 327 % Identity 36% Template c3sr9A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase s; PDBTitle: crystal structure of mouse ptpsigma Resolution 2.40 Å Model Dimensions (Å) X:61.082 Y:75.320 Z:51.280

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	I	R	C	Q	E	L	K	Y	D	V	G	G	G	E	R	F	D	S	L	T	D	L	V	E	H	Y	K	K	N	P	M	V	E	T	L	G	T	V	L	Q	L	K	Q	P	L	N	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		I	V	V	H	C	S	A	G	.	.	.	V	G	R	T	G	C	F	I	V	I	D	A	M	L	E	R	I	K	T	E	K	T	V	D	V	Y	G	H	V	T	L	M	R	S	Q	R	N	Y	M	V	Q	T	E	D	Q	Y	G	F	I
Template Known Secondary structure						S	S	S	S	.	.	.	S	S																T	T	S	S													T	T	S	T	T	S	S		S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		1544	.	.	.	.	.	1550	.				.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600
													218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	T	T	R	I	N	A	A	E	I	E	S	R	V	R	E	L	S	K	L	A	E	T	T	D	K	V	K	Q	G	F	W	E	E	F	E	T	L	Q	Q	Q	E	C	K	L	L	Y	S	R	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.																						.	.	.	.	.	.	.	.
Template Conservation																															.	.																						.	.	.	.	.	.	.	.
Template Sequence		H	E	A	L	L	E	A	V	G	C	G	N	T	E	V	P	A	R	S	L	Y	T	Y	I	Q	K	L	A	Q	.	.	V	E	P	G	E	H	V	T	G	M	E	L	E	F	K	R	L	A	F	I	T	.	.	.	.	.	.	.	.
Template Known Secondary structure											S							G	G	G									T	S	.	.			T	T		S	S									T	T			T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		1601	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.			1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	R	Q	E	N	K	N	K	N	R	Y	K	N	I	L	P	F	D	H	T	R	V	V	L	H	D	G	D	P	N	E	P	V	S	D	Y	I	N	A	N	I	I	M	P	E	F	E	T	K	C	N	N	S	K	P	K	K	S
Query Conservation
Alig confidence		.																														.														.	.	.	.	.	.	.	.
Template Conservation		.																														.														.	.	.	.	.	.	.	.
Template Sequence		.	A	S	L	P	C	N	K	F	K	N	R	L	V	N	I	L	P	Y	E	S	S	R	V	C	L	Q	P	I	R	.	G	V	E	G	S	D	Y	I	N	A	S	F	I	.	.	.	.	.	.	.	.	D	G	Y	R	Q	Q	K	A
Template Known Secondary structure		.	T	S		T	T		T	T	T		S		S	S	S				T	T	T	B							T	.	T		T	T		S			S					.	.	.	.	.	.	.	.			S	S	S	T	T
Template Predicted Secondary structure		.																														.														.	.	.	.	.	.	.	.
Template SS confidence
			1659	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.		.	.	1690	.	.	.	.	.	.	.	.	.	1700									.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	A	T	Q	G	C	L	Q	N	T	V	N	D	F	W	R	M	V	F	Q	E	N	S	R	V	I	V	M	T	T	K	E	V	E	R	G	K	S	K	C	V	K	Y	W	P	D	E	Y	A	L	K	E	Y	G	V	M	R	V	R
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		Y	I	A	T	Q	G	P	L	A	E	T	T	E	D	F	W	R	A	L	W	E	N	N	S	T	I	V	V	M	L	T	K	L	R	E	M	G	R	E	K	C	H	Q	Y	W	P	A	E	R	S	.	A	R	Y	Q	Y	F	V	V	D
Template Known Secondary structure										T	T	T											T	T								S		S	B		S	S	S	B		S				S		S	S	S		.				T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		1709	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.		.	1760	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	K	E	S	A	A	H	D	Y	T	L	R	E	L	K	L	S	K	V	G	Q	A	L	L	Q	G	N	T	E	R	T	V	W	Q	Y	H	F	R	T	W	P	D	H	G	V	P	S	D	P	G	G	V	L	D	F	L	E	E	V
Query Conservation
Alig confidence																					.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		P	M	A	E	Y	N	M	P	Q	Y	I	L	R	E	F	K	V	T	D	.	.	.	.	.	A	R	D	G	Q	S	R	T	V	R	Q	F	Q	F	T	D	W	P	E	Q	G	A	P	K	S	G	E	G	F	I	D	F	I	G	Q	V
Template Known Secondary structure									S	S											.	.	.	.	.	T	T	T														S		S	S	S			S		S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		1768	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.						.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	K	Q	E	S	I	V	D	A	G	P	V	V	V	H	C	S	A	G	I	G	R	T	G	T	F	I	V	I	D	I	L	I	D	I	I	R	E	K	G	V	D	C	D	I	D	V	P	K	T	I	Q	M	V	R	S	Q	R	S
Query Conservation
Alig confidence																																											.	.	.
Template Conservation																																											.	.	.
Template Sequence		H	K	T	K	E	Q	F	G	Q	D	G	P	I	S	V	H	C	S	A	G	V	G	R	T	G	V	F	I	T	L	S	I	V	L	E	R	M	R	Y	E	G	.	.	.	V	V	D	I	F	Q	T	V	K	V	L	R	T	Q	R	P
Template Known Secondary structure								T	T			S						S	S	S	S	S																			T		.	.	.													T	T	S	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		1823	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.				.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	V	Q	T	E	A	Q	Y	R	F	I	Y	M	A	V	Q	H	Y	I	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	V	Q	T	E	D	E	Y	Q	F	C	F	Q	A	A	L	E	Y	L	G	S
Template Known Secondary structure		T		S		S
Template Predicted Secondary structure
Template SS confidence
		1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D